Hb_001396_150

Information

Type transcription factor
Description TF Family: M-type
Location Contig1396: 109872-110349
Sequence    

Annotation

kegg
ID pop:POPTR_0001s13660g
description POPTRDRAFT_840315; hypothetical protein
nr
ID XP_002299316.1
description hypothetical protein POPTR_0001s13660g [Populus trichocarpa]
swissprot
ID Q54QY7
description Serum factor response D OS=Dictyostelium discoideum GN=srfD PE=3 SV=1
trembl
ID B9GMM4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13660g PE=4 SV=1
Gene Ontology
ID GO:0005634
description flowering locus c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10752: 110307-110617
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_150 0.0 transcription factor TF Family: M-type hypothetical protein POPTR_0001s13660g [Populus trichocarpa]
2 Hb_157846_010 0.1983827022 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
3 Hb_002235_140 0.2005561064 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000217_060 0.220843519 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000375_370 0.2240150709 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
6 Hb_049160_010 0.2388090521 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
7 Hb_114261_010 0.252959285 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
8 Hb_031089_030 0.2530744967 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
9 Hb_139859_010 0.2535410511 - - PREDICTED: cell division control protein 48 homolog D-like [Nicotiana sylvestris]
10 Hb_005715_020 0.2561046046 - - PREDICTED: ras-related protein RABC2a-like isoform X2 [Jatropha curcas]
11 Hb_002918_090 0.2567606897 - - PREDICTED: auxin-repressed 12.5 kDa protein-like [Nelumbo nucifera]
12 Hb_003157_030 0.2599902369 - - PREDICTED: exocyst complex component EXO70A1-like [Nicotiana sylvestris]
13 Hb_009848_030 0.2670037841 - - long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
14 Hb_000649_010 0.2676262406 - - PREDICTED: adagio protein 3 [Jatropha curcas]
15 Hb_001247_140 0.2736355109 - - -
16 Hb_007846_040 0.2736786688 - - PREDICTED: uncharacterized protein LOC105646691 [Jatropha curcas]
17 Hb_009848_040 0.275252703 - - hypothetical protein B456_009G349600 [Gossypium raimondii]
18 Hb_003929_060 0.2756909728 - - PREDICTED: uncharacterized protein ECU03_1610 [Jatropha curcas]
19 Hb_006501_020 0.2762613683 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
20 Hb_084470_010 0.2765101752 - - Disease resistance protein RPS5, putative [Ricinus communis]

Gene co-expression network

sample Hb_001396_150 Hb_001396_150 Hb_157846_010 Hb_157846_010 Hb_001396_150--Hb_157846_010 Hb_002235_140 Hb_002235_140 Hb_001396_150--Hb_002235_140 Hb_000217_060 Hb_000217_060 Hb_001396_150--Hb_000217_060 Hb_000375_370 Hb_000375_370 Hb_001396_150--Hb_000375_370 Hb_049160_010 Hb_049160_010 Hb_001396_150--Hb_049160_010 Hb_114261_010 Hb_114261_010 Hb_001396_150--Hb_114261_010 Hb_157846_010--Hb_049160_010 Hb_000649_010 Hb_000649_010 Hb_157846_010--Hb_000649_010 Hb_004883_060 Hb_004883_060 Hb_157846_010--Hb_004883_060 Hb_157846_010--Hb_000217_060 Hb_063480_020 Hb_063480_020 Hb_157846_010--Hb_063480_020 Hb_002918_090 Hb_002918_090 Hb_002235_140--Hb_002918_090 Hb_009848_040 Hb_009848_040 Hb_002235_140--Hb_009848_040 Hb_009848_030 Hb_009848_030 Hb_002235_140--Hb_009848_030 Hb_002235_140--Hb_000375_370 Hb_031089_030 Hb_031089_030 Hb_002235_140--Hb_031089_030 Hb_000217_060--Hb_049160_010 Hb_084858_010 Hb_084858_010 Hb_000217_060--Hb_084858_010 Hb_007846_040 Hb_007846_040 Hb_000217_060--Hb_007846_040 Hb_134894_010 Hb_134894_010 Hb_000217_060--Hb_134894_010 Hb_005122_060 Hb_005122_060 Hb_000375_370--Hb_005122_060 Hb_000375_370--Hb_031089_030 Hb_001247_140 Hb_001247_140 Hb_000375_370--Hb_001247_140 Hb_006816_410 Hb_006816_410 Hb_000375_370--Hb_006816_410 Hb_006501_020 Hb_006501_020 Hb_000375_370--Hb_006501_020 Hb_000365_060 Hb_000365_060 Hb_000375_370--Hb_000365_060 Hb_049160_010--Hb_063480_020 Hb_000497_010 Hb_000497_010 Hb_049160_010--Hb_000497_010 Hb_141918_010 Hb_141918_010 Hb_049160_010--Hb_141918_010 Hb_001907_100 Hb_001907_100 Hb_049160_010--Hb_001907_100 Hb_010727_010 Hb_010727_010 Hb_049160_010--Hb_010727_010 Hb_003929_060 Hb_003929_060 Hb_114261_010--Hb_003929_060 Hb_000061_040 Hb_000061_040 Hb_114261_010--Hb_000061_040 Hb_000160_200 Hb_000160_200 Hb_114261_010--Hb_000160_200 Hb_001023_020 Hb_001023_020 Hb_114261_010--Hb_001023_020 Hb_000270_500 Hb_000270_500 Hb_114261_010--Hb_000270_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.19385 6.64738 0.0860598 0.371602 1.14678 13.3882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.713598 0.560662 0.290234 4.33282 0.635744

CAGE analysis