Hb_002918_090

Information

Type -
Description -
Location Contig2918: 92126-93760
Sequence    

Annotation

kegg
ID rcu:RCOM_1673900
description Auxin-repressed 12.5 kDa protein, putative
nr
ID XP_010272386.1
description PREDICTED: auxin-repressed 12.5 kDa protein-like [Nelumbo nucifera]
swissprot
ID Q05349
description Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1
trembl
ID Q52QX4
description Auxin-repressed protein-like protein ARP1 OS=Manihot esculenta PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30599: 90663-93750 , PASA_asmbl_30600: 92037-93703
cDNA
(Sanger)
(ID:Location)		 003_O12.ab1: 92405-93608 , 004_M20.ab1: 92356-93605 , 005_H10.ab1: 92406-93605 , 005_H24.ab1: 92356-93605 , 007_J22.ab1: 92356-93605 , 007_O17.ab1: 92355-93605 , 008_M17.ab1: 92531-93605 , 010_N09.ab1: 92375-93605 , 012_K04.ab1: 92357-93605 , 012_M08.ab1: 92364-93608 , 016_B03.ab1: 92356-93605 , 017_J13.ab1: 92355-93608 , 020_D24.ab1: 92405-93605 , 021_B20.ab1: 92355-93606 , 025_M04.ab1: 92395-93608 , 026_L06.ab1: 92395-93606 , 026_N07.ab1: 92367-93608 , 027_F20.ab1: 92335-93606 , 027_K03.ab1: 92402-93608 , 029_J01.ab1: 93156-93602 , 033_I19.ab1: 92355-93608 , 035_C19.ab1: 92356-93605 , 036_C08.ab1: 92461-93733 , 041_E11.ab1: 92355-93605 , 041_G14.ab1: 92355-93605 , 041_L06.ab1: 92356-93605 , 042_E23.ab1: 92409-93605 , 043_N02.ab1: 92389-93750 , 046_L01.ab1: 92320-93608 , 046_M01.ab1: 92355-92513 , 050_O12.ab1: 92362-93605 , 052_K02.ab1: 92315-93340 , 053_H19.ab1: 92361-93608 , 053_N07.ab1: 92364-93608 , 053_O02.ab1: 92512-93730 , 053_O24.ab1: 92355-93605

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002918_090 0.0 - - PREDICTED: auxin-repressed 12.5 kDa protein-like [Nelumbo nucifera]
2 Hb_002235_140 0.1499171565 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000375_370 0.1794444742 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
4 Hb_057490_010 0.182558744 - - PREDICTED: mannose-1-phosphate guanyltransferase alpha [Jatropha curcas]
5 Hb_001396_260 0.1866287394 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
6 Hb_009848_040 0.1874936129 - - hypothetical protein B456_009G349600 [Gossypium raimondii]
7 Hb_003299_090 0.1878433697 - - hypothetical protein PRUPE_ppa011647mg [Prunus persica]
8 Hb_084429_010 0.1896269534 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Populus euphratica]
9 Hb_011861_070 0.1998914406 - - F-box/LRR-repeat protein, putative [Ricinus communis]
10 Hb_000260_090 0.2042440036 - - PREDICTED: ubiquitin-conjugating enzyme E2 28 [Gossypium raimondii]
11 Hb_004096_080 0.2045788964 - - PREDICTED: IST1 homolog [Jatropha curcas]
12 Hb_031089_030 0.2057206086 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
13 Hb_000139_240 0.2081016193 - - PREDICTED: putative F-box protein At3g16210 [Jatropha curcas]
14 Hb_000568_040 0.2110088105 - - PREDICTED: mRNA-decapping enzyme subunit 2 [Jatropha curcas]
15 Hb_005914_090 0.2123039536 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
16 Hb_000152_740 0.2125590397 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
17 Hb_000078_100 0.2146410994 - - PREDICTED: topless-related protein 4-like isoform X2 [Jatropha curcas]
18 Hb_003978_010 0.2151088622 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
19 Hb_000649_010 0.2153478364 - - PREDICTED: adagio protein 3 [Jatropha curcas]
20 Hb_005635_010 0.2162095198 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002918_090 Hb_002918_090 Hb_002235_140 Hb_002235_140 Hb_002918_090--Hb_002235_140 Hb_000375_370 Hb_000375_370 Hb_002918_090--Hb_000375_370 Hb_057490_010 Hb_057490_010 Hb_002918_090--Hb_057490_010 Hb_001396_260 Hb_001396_260 Hb_002918_090--Hb_001396_260 Hb_009848_040 Hb_009848_040 Hb_002918_090--Hb_009848_040 Hb_003299_090 Hb_003299_090 Hb_002918_090--Hb_003299_090 Hb_002235_140--Hb_009848_040 Hb_001396_150 Hb_001396_150 Hb_002235_140--Hb_001396_150 Hb_009848_030 Hb_009848_030 Hb_002235_140--Hb_009848_030 Hb_002235_140--Hb_000375_370 Hb_031089_030 Hb_031089_030 Hb_002235_140--Hb_031089_030 Hb_005122_060 Hb_005122_060 Hb_000375_370--Hb_005122_060 Hb_000375_370--Hb_031089_030 Hb_001247_140 Hb_001247_140 Hb_000375_370--Hb_001247_140 Hb_006816_410 Hb_006816_410 Hb_000375_370--Hb_006816_410 Hb_006501_020 Hb_006501_020 Hb_000375_370--Hb_006501_020 Hb_000365_060 Hb_000365_060 Hb_000375_370--Hb_000365_060 Hb_025048_040 Hb_025048_040 Hb_057490_010--Hb_025048_040 Hb_003995_010 Hb_003995_010 Hb_057490_010--Hb_003995_010 Hb_000814_090 Hb_000814_090 Hb_057490_010--Hb_000814_090 Hb_001278_060 Hb_001278_060 Hb_057490_010--Hb_001278_060 Hb_003716_020 Hb_003716_020 Hb_057490_010--Hb_003716_020 Hb_000213_070 Hb_000213_070 Hb_057490_010--Hb_000213_070 Hb_084429_010 Hb_084429_010 Hb_001396_260--Hb_084429_010 Hb_015763_020 Hb_015763_020 Hb_001396_260--Hb_015763_020 Hb_004096_080 Hb_004096_080 Hb_001396_260--Hb_004096_080 Hb_001396_260--Hb_031089_030 Hb_003157_010 Hb_003157_010 Hb_001396_260--Hb_003157_010 Hb_009028_030 Hb_009028_030 Hb_001396_260--Hb_009028_030 Hb_012423_010 Hb_012423_010 Hb_009848_040--Hb_012423_010 Hb_009848_040--Hb_084429_010 Hb_009848_040--Hb_009848_030 Hb_009848_040--Hb_004096_080 Hb_006588_150 Hb_006588_150 Hb_009848_040--Hb_006588_150 Hb_005635_010 Hb_005635_010 Hb_003299_090--Hb_005635_010 Hb_005914_090 Hb_005914_090 Hb_003299_090--Hb_005914_090 Hb_000347_150 Hb_000347_150 Hb_003299_090--Hb_000347_150 Hb_001307_140 Hb_001307_140 Hb_003299_090--Hb_001307_140 Hb_000270_020 Hb_000270_020 Hb_003299_090--Hb_000270_020 Hb_012016_020 Hb_012016_020 Hb_003299_090--Hb_012016_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2413.27 2355.06 33.4345 659.071 1927.76 4935.88
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2075.84 323.128 315.532 2398.29 52.4278

CAGE analysis