Hb_005914_090

Information

Type -
Description -
Location Contig5914: 58290-62325
Sequence    

Annotation

kegg
ID pop:POPTR_0010s07790g
description hypothetical protein
nr
ID XP_012069892.1
description PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
swissprot
ID Q8W034
description Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 SV=1
trembl
ID A0A067L794
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02373 PE=4 SV=1
Gene Ontology
ID GO:0000166
description heterogeneous nuclear ribonucleoprotein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50233: 59106-62168
cDNA
(Sanger)
(ID:Location)		 033_E14.ab1: 60305-62168

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005914_090 0.0 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
2 Hb_003299_090 0.091910515 - - hypothetical protein PRUPE_ppa011647mg [Prunus persica]
3 Hb_000453_080 0.1149389306 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_012016_020 0.1215138121 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]
5 Hb_000347_150 0.1222059461 - - Nucleolysin TIAR [Morus notabilis]
6 Hb_001431_070 0.1231991856 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
7 Hb_139859_010 0.1241769708 - - PREDICTED: cell division control protein 48 homolog D-like [Nicotiana sylvestris]
8 Hb_013753_010 0.1256683779 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
9 Hb_000805_310 0.1289445526 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Jatropha curcas]
10 Hb_005635_010 0.1293817666 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
11 Hb_000212_280 0.1336442494 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
12 Hb_000365_060 0.1353856251 - - 5'->3' exoribonuclease, putative [Ricinus communis]
13 Hb_002235_360 0.1357970191 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Jatropha curcas]
14 Hb_002675_190 0.1383568243 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_001582_030 0.1384637056 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
16 Hb_006901_040 0.1395473384 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005399_010 0.1423453126 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
18 Hb_113216_010 0.1438634808 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
19 Hb_001486_120 0.1441631668 - - PREDICTED: importin-5-like [Jatropha curcas]
20 Hb_000270_020 0.1443320398 - - hypothetical protein POPTR_0015s07630g [Populus trichocarpa]

Gene co-expression network

sample Hb_005914_090 Hb_005914_090 Hb_003299_090 Hb_003299_090 Hb_005914_090--Hb_003299_090 Hb_000453_080 Hb_000453_080 Hb_005914_090--Hb_000453_080 Hb_012016_020 Hb_012016_020 Hb_005914_090--Hb_012016_020 Hb_000347_150 Hb_000347_150 Hb_005914_090--Hb_000347_150 Hb_001431_070 Hb_001431_070 Hb_005914_090--Hb_001431_070 Hb_139859_010 Hb_139859_010 Hb_005914_090--Hb_139859_010 Hb_005635_010 Hb_005635_010 Hb_003299_090--Hb_005635_010 Hb_003299_090--Hb_000347_150 Hb_001307_140 Hb_001307_140 Hb_003299_090--Hb_001307_140 Hb_000270_020 Hb_000270_020 Hb_003299_090--Hb_000270_020 Hb_003299_090--Hb_012016_020 Hb_000453_080--Hb_012016_020 Hb_001582_030 Hb_001582_030 Hb_000453_080--Hb_001582_030 Hb_005000_270 Hb_005000_270 Hb_000453_080--Hb_005000_270 Hb_000453_080--Hb_005635_010 Hb_002105_080 Hb_002105_080 Hb_000453_080--Hb_002105_080 Hb_001486_120 Hb_001486_120 Hb_000453_080--Hb_001486_120 Hb_002341_030 Hb_002341_030 Hb_012016_020--Hb_002341_030 Hb_001871_040 Hb_001871_040 Hb_012016_020--Hb_001871_040 Hb_005399_010 Hb_005399_010 Hb_012016_020--Hb_005399_010 Hb_000906_060 Hb_000906_060 Hb_012016_020--Hb_000906_060 Hb_008528_010 Hb_008528_010 Hb_012016_020--Hb_008528_010 Hb_000347_150--Hb_000270_020 Hb_000453_270 Hb_000453_270 Hb_000347_150--Hb_000453_270 Hb_000035_120 Hb_000035_120 Hb_000347_150--Hb_000035_120 Hb_000347_150--Hb_001307_140 Hb_000413_130 Hb_000413_130 Hb_001431_070--Hb_000413_130 Hb_002725_070 Hb_002725_070 Hb_001431_070--Hb_002725_070 Hb_005295_040 Hb_005295_040 Hb_001431_070--Hb_005295_040 Hb_117950_020 Hb_117950_020 Hb_001431_070--Hb_117950_020 Hb_001439_180 Hb_001439_180 Hb_001431_070--Hb_001439_180 Hb_000367_290 Hb_000367_290 Hb_001431_070--Hb_000367_290 Hb_171788_010 Hb_171788_010 Hb_139859_010--Hb_171788_010 Hb_139859_010--Hb_003299_090 Hb_139859_010--Hb_000453_080 Hb_139859_010--Hb_000270_020 Hb_006455_080 Hb_006455_080 Hb_139859_010--Hb_006455_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
676.803 438.121 19.7358 63.1144 650.713 1418.21
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
249.568 139.911 341.303 276.8 42.4195

CAGE analysis