Hb_000453_270

Information

Type -
Description -
Location Contig453: 194542-195600
Sequence    

Annotation

kegg
ID rcu:RCOM_1346080
description ATP-dependent RNA helicase, putative
nr
ID XP_012519641.1
description PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 [Propithecus coquereli]
swissprot
ID -
description -
trembl
ID A0A067KTY8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09458 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000453_270 0.0 - - PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 [Propithecus coquereli]
2 Hb_001307_140 0.0940561304 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Jatropha curcas]
3 Hb_063047_010 0.0988940195 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
4 Hb_000703_080 0.1069580205 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
5 Hb_002235_360 0.1088573823 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Jatropha curcas]
6 Hb_010298_010 0.1109268322 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
7 Hb_000152_740 0.1169832741 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
8 Hb_000316_030 0.117673759 - - zinc finger protein, putative [Ricinus communis]
9 Hb_000347_150 0.1187538055 - - Nucleolysin TIAR [Morus notabilis]
10 Hb_000017_340 0.1197953842 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
11 Hb_000088_020 0.1201436171 transcription factor TF Family: M-type hypothetical protein JCGZ_10946 [Jatropha curcas]
12 Hb_000284_210 0.1205733396 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006455_090 0.1228455696 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
14 Hb_118301_010 0.1234693225 - - Endoribonuclease Dicer-1-like protein [Morus notabilis]
15 Hb_000977_310 0.1239334905 - - PREDICTED: gamma-tubulin complex component 2 isoform X4 [Jatropha curcas]
16 Hb_110364_010 0.1243081585 - - gamma-tubulin complex component, putative [Ricinus communis]
17 Hb_008528_010 0.1249591403 - - PREDICTED: uncharacterized protein LOC105628498 [Jatropha curcas]
18 Hb_000878_130 0.1265175558 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002863_040 0.1277877058 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
20 Hb_002046_040 0.1280141863 - - PREDICTED: topless-related protein 4 [Malus domestica]

Gene co-expression network

sample Hb_000453_270 Hb_000453_270 Hb_001307_140 Hb_001307_140 Hb_000453_270--Hb_001307_140 Hb_063047_010 Hb_063047_010 Hb_000453_270--Hb_063047_010 Hb_000703_080 Hb_000703_080 Hb_000453_270--Hb_000703_080 Hb_002235_360 Hb_002235_360 Hb_000453_270--Hb_002235_360 Hb_010298_010 Hb_010298_010 Hb_000453_270--Hb_010298_010 Hb_000152_740 Hb_000152_740 Hb_000453_270--Hb_000152_740 Hb_110364_010 Hb_110364_010 Hb_001307_140--Hb_110364_010 Hb_001307_140--Hb_063047_010 Hb_001040_160 Hb_001040_160 Hb_001307_140--Hb_001040_160 Hb_000568_040 Hb_000568_040 Hb_001307_140--Hb_000568_040 Hb_001943_010 Hb_001943_010 Hb_001307_140--Hb_001943_010 Hb_001609_010 Hb_001609_010 Hb_063047_010--Hb_001609_010 Hb_063047_010--Hb_001040_160 Hb_001871_040 Hb_001871_040 Hb_063047_010--Hb_001871_040 Hb_000316_030 Hb_000316_030 Hb_063047_010--Hb_000316_030 Hb_063047_010--Hb_110364_010 Hb_004881_050 Hb_004881_050 Hb_063047_010--Hb_004881_050 Hb_000284_210 Hb_000284_210 Hb_000703_080--Hb_000284_210 Hb_002097_090 Hb_002097_090 Hb_000703_080--Hb_002097_090 Hb_004934_090 Hb_004934_090 Hb_000703_080--Hb_004934_090 Hb_003728_030 Hb_003728_030 Hb_000703_080--Hb_003728_030 Hb_001454_060 Hb_001454_060 Hb_000703_080--Hb_001454_060 Hb_000390_060 Hb_000390_060 Hb_000703_080--Hb_000390_060 Hb_008528_010 Hb_008528_010 Hb_002235_360--Hb_008528_010 Hb_006740_020 Hb_006740_020 Hb_002235_360--Hb_006740_020 Hb_001431_070 Hb_001431_070 Hb_002235_360--Hb_001431_070 Hb_113216_010 Hb_113216_010 Hb_002235_360--Hb_113216_010 Hb_006173_020 Hb_006173_020 Hb_002235_360--Hb_006173_020 Hb_001582_030 Hb_001582_030 Hb_002235_360--Hb_001582_030 Hb_000671_100 Hb_000671_100 Hb_010298_010--Hb_000671_100 Hb_010261_020 Hb_010261_020 Hb_010298_010--Hb_010261_020 Hb_024714_030 Hb_024714_030 Hb_010298_010--Hb_024714_030 Hb_033642_020 Hb_033642_020 Hb_010298_010--Hb_033642_020 Hb_000977_310 Hb_000977_310 Hb_010298_010--Hb_000977_310 Hb_000307_200 Hb_000307_200 Hb_010298_010--Hb_000307_200 Hb_000152_740--Hb_063047_010 Hb_118301_010 Hb_118301_010 Hb_000152_740--Hb_118301_010 Hb_005000_100 Hb_005000_100 Hb_000152_740--Hb_005000_100 Hb_000042_230 Hb_000042_230 Hb_000152_740--Hb_000042_230 Hb_000017_340 Hb_000017_340 Hb_000152_740--Hb_000017_340 Hb_000028_030 Hb_000028_030 Hb_000152_740--Hb_000028_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.51872 1.07548 0.158467 0.275128 1.65258 3.97434
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.70532 0.731282 0.982011 0.445721 0.604882

CAGE analysis