Hb_001307_140

Information

Type -
Description -
Location Contig1307: 130917-133805
Sequence    

Annotation

kegg
ID pmum:103334426
description heterogeneous nuclear ribonucleoprotein 1-like
nr
ID XP_012085257.1
description PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Jatropha curcas]
swissprot
ID Q8W034
description Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 SV=1
trembl
ID A0A067K3U3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17642 PE=4 SV=1
Gene Ontology
ID GO:0000166
description heterogeneous nuclear ribonucleoprotein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09102: 131113-133772
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001307_140 0.0 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Jatropha curcas]
2 Hb_110364_010 0.0608484189 - - gamma-tubulin complex component, putative [Ricinus communis]
3 Hb_063047_010 0.0813888342 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
4 Hb_001040_160 0.083893735 - - glutaredoxin, grx, putative [Ricinus communis]
5 Hb_000568_040 0.0845208923 - - PREDICTED: mRNA-decapping enzyme subunit 2 [Jatropha curcas]
6 Hb_000453_270 0.0940561304 - - PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 [Propithecus coquereli]
7 Hb_001943_010 0.0949953803 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
8 Hb_001871_040 0.0961727599 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
9 Hb_000316_030 0.0974096635 - - zinc finger protein, putative [Ricinus communis]
10 Hb_001771_130 0.0997482692 - - PREDICTED: pentatricopeptide repeat-containing protein At2g27610 [Jatropha curcas]
11 Hb_002046_040 0.1004561989 - - PREDICTED: topless-related protein 4 [Malus domestica]
12 Hb_000703_080 0.1020141547 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
13 Hb_025012_010 0.1021994794 - - PREDICTED: importin-4 [Vitis vinifera]
14 Hb_000017_340 0.1034691872 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
15 Hb_005635_010 0.1036856554 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
16 Hb_000977_310 0.1039122624 - - PREDICTED: gamma-tubulin complex component 2 isoform X4 [Jatropha curcas]
17 Hb_003299_090 0.1049515543 - - hypothetical protein PRUPE_ppa011647mg [Prunus persica]
18 Hb_000011_080 0.1069272336 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
19 Hb_002067_150 0.1071198592 - - PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]
20 Hb_000173_400 0.1072397325 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]

Gene co-expression network

sample Hb_001307_140 Hb_001307_140 Hb_110364_010 Hb_110364_010 Hb_001307_140--Hb_110364_010 Hb_063047_010 Hb_063047_010 Hb_001307_140--Hb_063047_010 Hb_001040_160 Hb_001040_160 Hb_001307_140--Hb_001040_160 Hb_000568_040 Hb_000568_040 Hb_001307_140--Hb_000568_040 Hb_000453_270 Hb_000453_270 Hb_001307_140--Hb_000453_270 Hb_001943_010 Hb_001943_010 Hb_001307_140--Hb_001943_010 Hb_110364_010--Hb_063047_010 Hb_110364_010--Hb_001040_160 Hb_002341_030 Hb_002341_030 Hb_110364_010--Hb_002341_030 Hb_005635_010 Hb_005635_010 Hb_110364_010--Hb_005635_010 Hb_001871_040 Hb_001871_040 Hb_110364_010--Hb_001871_040 Hb_001609_010 Hb_001609_010 Hb_063047_010--Hb_001609_010 Hb_063047_010--Hb_001040_160 Hb_063047_010--Hb_001871_040 Hb_000316_030 Hb_000316_030 Hb_063047_010--Hb_000316_030 Hb_004881_050 Hb_004881_050 Hb_063047_010--Hb_004881_050 Hb_001040_160--Hb_000316_030 Hb_008714_020 Hb_008714_020 Hb_001040_160--Hb_008714_020 Hb_001040_160--Hb_001609_010 Hb_001040_160--Hb_005635_010 Hb_025012_010 Hb_025012_010 Hb_001040_160--Hb_025012_010 Hb_007317_190 Hb_007317_190 Hb_000568_040--Hb_007317_190 Hb_000568_040--Hb_001040_160 Hb_000017_340 Hb_000017_340 Hb_000568_040--Hb_000017_340 Hb_000370_030 Hb_000370_030 Hb_000568_040--Hb_000370_030 Hb_002067_150 Hb_002067_150 Hb_000568_040--Hb_002067_150 Hb_000453_270--Hb_063047_010 Hb_000703_080 Hb_000703_080 Hb_000453_270--Hb_000703_080 Hb_002235_360 Hb_002235_360 Hb_000453_270--Hb_002235_360 Hb_010298_010 Hb_010298_010 Hb_000453_270--Hb_010298_010 Hb_000152_740 Hb_000152_740 Hb_000453_270--Hb_000152_740 Hb_005205_020 Hb_005205_020 Hb_001943_010--Hb_005205_020 Hb_001943_010--Hb_000370_030 Hb_000184_130 Hb_000184_130 Hb_001943_010--Hb_000184_130 Hb_001943_010--Hb_025012_010 Hb_001943_010--Hb_000316_030 Hb_001771_130 Hb_001771_130 Hb_001943_010--Hb_001771_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
130.449 122.616 24.1134 37.9577 155.908 353.34
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
139.687 55.4918 116.344 88.6354 47.4063

CAGE analysis