Hb_001431_070

Information

Type -
Description -
Location Contig1431: 67122-85223
Sequence    

Annotation

kegg
ID rcu:RCOM_0510090
description scythe/bat3, putative
nr
ID XP_012081116.1
description PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
swissprot
ID P46379
description Large proline-rich protein BAG6 OS=Homo sapiens GN=BAG6 PE=1 SV=2
trembl
ID A0A067K587
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11375: 67118-85234 , PASA_asmbl_11376: 73814-73957 , PASA_asmbl_11379: 82658-82849
cDNA
(Sanger)
(ID:Location)		 013_A08.ab1: 67118-80285 , 022_G20.ab1: 67177-80097 , 033_J15.ab1: 67187-80742 , 038_P21.ab1: 67177-80747

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001431_070 0.0 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
2 Hb_000413_130 0.0661806826 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
3 Hb_002725_070 0.0744167935 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
4 Hb_005295_040 0.080192129 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
5 Hb_117950_020 0.0804083982 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
6 Hb_001439_180 0.0846527361 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
7 Hb_000367_290 0.0863672845 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
8 Hb_002169_010 0.0898675318 - - PREDICTED: la-related protein 6B [Jatropha curcas]
9 Hb_002341_030 0.089957203 - - PREDICTED: transcription factor bHLH140 [Jatropha curcas]
10 Hb_004032_350 0.09083246 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
11 Hb_002675_190 0.0916272109 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_005314_010 0.0920768052 - - nucleotide binding protein, putative [Ricinus communis]
13 Hb_000331_480 0.0921187523 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
14 Hb_042083_070 0.0922385156 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
15 Hb_000212_280 0.0939707033 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
16 Hb_012016_020 0.0940708832 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]
17 Hb_005635_010 0.0953178098 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
18 Hb_005399_010 0.095482892 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
19 Hb_029281_010 0.0958249539 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
20 Hb_000001_180 0.0961444189 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]

Gene co-expression network

sample Hb_001431_070 Hb_001431_070 Hb_000413_130 Hb_000413_130 Hb_001431_070--Hb_000413_130 Hb_002725_070 Hb_002725_070 Hb_001431_070--Hb_002725_070 Hb_005295_040 Hb_005295_040 Hb_001431_070--Hb_005295_040 Hb_117950_020 Hb_117950_020 Hb_001431_070--Hb_117950_020 Hb_001439_180 Hb_001439_180 Hb_001431_070--Hb_001439_180 Hb_000367_290 Hb_000367_290 Hb_001431_070--Hb_000367_290 Hb_005314_010 Hb_005314_010 Hb_000413_130--Hb_005314_010 Hb_000413_130--Hb_000367_290 Hb_000413_130--Hb_002725_070 Hb_029281_010 Hb_029281_010 Hb_000413_130--Hb_029281_010 Hb_006091_030 Hb_006091_030 Hb_000413_130--Hb_006091_030 Hb_002725_070--Hb_005295_040 Hb_042083_070 Hb_042083_070 Hb_002725_070--Hb_042083_070 Hb_000814_090 Hb_000814_090 Hb_002725_070--Hb_000814_090 Hb_002820_040 Hb_002820_040 Hb_002725_070--Hb_002820_040 Hb_000078_100 Hb_000078_100 Hb_002725_070--Hb_000078_100 Hb_002725_070--Hb_117950_020 Hb_004724_360 Hb_004724_360 Hb_005295_040--Hb_004724_360 Hb_001975_020 Hb_001975_020 Hb_005295_040--Hb_001975_020 Hb_005295_040--Hb_000367_290 Hb_005635_010 Hb_005635_010 Hb_005295_040--Hb_005635_010 Hb_000327_310 Hb_000327_310 Hb_005295_040--Hb_000327_310 Hb_153547_010 Hb_153547_010 Hb_117950_020--Hb_153547_010 Hb_117950_020--Hb_000078_100 Hb_000317_440 Hb_000317_440 Hb_117950_020--Hb_000317_440 Hb_000631_150 Hb_000631_150 Hb_117950_020--Hb_000631_150 Hb_000076_290 Hb_000076_290 Hb_001439_180--Hb_000076_290 Hb_001034_020 Hb_001034_020 Hb_001439_180--Hb_001034_020 Hb_002675_190 Hb_002675_190 Hb_001439_180--Hb_002675_190 Hb_001439_180--Hb_029281_010 Hb_000331_480 Hb_000331_480 Hb_001439_180--Hb_000331_480 Hb_004931_040 Hb_004931_040 Hb_001439_180--Hb_004931_040 Hb_000152_890 Hb_000152_890 Hb_000367_290--Hb_000152_890 Hb_000116_280 Hb_000116_280 Hb_000367_290--Hb_000116_280 Hb_004032_350 Hb_004032_350 Hb_000367_290--Hb_004032_350 Hb_000367_290--Hb_001975_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
181.195 94.4724 14.2694 22.1473 200.954 260.549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
108.146 39.4051 106.014 55.1267 21.6748

CAGE analysis