Hb_139859_010

Information

Type -
Description -
Location Contig139859: 2917-3331
Sequence    

Annotation

kegg
ID gmx:100805946
description cell division cycle protein 48 homolog
nr
ID XP_009773911.1
description PREDICTED: cell division control protein 48 homolog D-like [Nicotiana sylvestris]
swissprot
ID P54774
description Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1
trembl
ID K7LQC6
description Uncharacterized protein OS=Glycine max PE=3 SV=1
Gene Ontology
ID GO:0005524
description cell division cycle protein 48 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_139859_010 0.0 - - PREDICTED: cell division control protein 48 homolog D-like [Nicotiana sylvestris]
2 Hb_171788_010 0.1140819716 - - hypothetical protein CISIN_1g007892mg [Citrus sinensis]
3 Hb_003299_090 0.1148273383 - - hypothetical protein PRUPE_ppa011647mg [Prunus persica]
4 Hb_005914_090 0.1241769708 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
5 Hb_000453_080 0.1266799978 - - nucleic acid binding protein, putative [Ricinus communis]
6 Hb_000270_020 0.1356646985 - - hypothetical protein POPTR_0015s07630g [Populus trichocarpa]
7 Hb_006455_080 0.1411727788 - - PREDICTED: transcription factor GTE6-like isoform X2 [Nelumbo nucifera]
8 Hb_006455_090 0.142376611 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
9 Hb_005635_010 0.1478945524 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
10 Hb_000200_040 0.1513501375 - - -
11 Hb_003711_040 0.1516981836 - - PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]
12 Hb_012016_020 0.1526151755 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]
13 Hb_002092_090 0.1535122106 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
14 Hb_006723_020 0.1537173549 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
15 Hb_006455_110 0.1539669661 - - bromodomain-containing protein, putative [Ricinus communis]
16 Hb_000699_250 0.1542253778 - - Poly(rC)-binding protein, putative [Ricinus communis]
17 Hb_003073_210 0.1553131928 - - hypothetical protein CISIN_1g036722mg, partial [Citrus sinensis]
18 Hb_081879_030 0.155406439 - - PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Jatropha curcas]
19 Hb_003157_030 0.1577700903 - - PREDICTED: exocyst complex component EXO70A1-like [Nicotiana sylvestris]
20 Hb_110364_010 0.1589323699 - - gamma-tubulin complex component, putative [Ricinus communis]

Gene co-expression network

sample Hb_139859_010 Hb_139859_010 Hb_171788_010 Hb_171788_010 Hb_139859_010--Hb_171788_010 Hb_003299_090 Hb_003299_090 Hb_139859_010--Hb_003299_090 Hb_005914_090 Hb_005914_090 Hb_139859_010--Hb_005914_090 Hb_000453_080 Hb_000453_080 Hb_139859_010--Hb_000453_080 Hb_000270_020 Hb_000270_020 Hb_139859_010--Hb_000270_020 Hb_006455_080 Hb_006455_080 Hb_139859_010--Hb_006455_080 Hb_083043_010 Hb_083043_010 Hb_171788_010--Hb_083043_010 Hb_006455_110 Hb_006455_110 Hb_171788_010--Hb_006455_110 Hb_003711_040 Hb_003711_040 Hb_171788_010--Hb_003711_040 Hb_030328_010 Hb_030328_010 Hb_171788_010--Hb_030328_010 Hb_000486_060 Hb_000486_060 Hb_171788_010--Hb_000486_060 Hb_005635_010 Hb_005635_010 Hb_003299_090--Hb_005635_010 Hb_003299_090--Hb_005914_090 Hb_000347_150 Hb_000347_150 Hb_003299_090--Hb_000347_150 Hb_001307_140 Hb_001307_140 Hb_003299_090--Hb_001307_140 Hb_003299_090--Hb_000270_020 Hb_012016_020 Hb_012016_020 Hb_003299_090--Hb_012016_020 Hb_005914_090--Hb_000453_080 Hb_005914_090--Hb_012016_020 Hb_005914_090--Hb_000347_150 Hb_001431_070 Hb_001431_070 Hb_005914_090--Hb_001431_070 Hb_000453_080--Hb_012016_020 Hb_001582_030 Hb_001582_030 Hb_000453_080--Hb_001582_030 Hb_005000_270 Hb_005000_270 Hb_000453_080--Hb_005000_270 Hb_000453_080--Hb_005635_010 Hb_002105_080 Hb_002105_080 Hb_000453_080--Hb_002105_080 Hb_001486_120 Hb_001486_120 Hb_000453_080--Hb_001486_120 Hb_000270_020--Hb_000347_150 Hb_000575_080 Hb_000575_080 Hb_000270_020--Hb_000575_080 Hb_000270_020--Hb_001307_140 Hb_003073_210 Hb_003073_210 Hb_000270_020--Hb_003073_210 Hb_006455_090 Hb_006455_090 Hb_006455_080--Hb_006455_090 Hb_006455_080--Hb_006455_110 Hb_000248_050 Hb_000248_050 Hb_006455_080--Hb_000248_050 Hb_006455_080--Hb_003711_040 Hb_000295_100 Hb_000295_100 Hb_006455_080--Hb_000295_100 Hb_006455_080--Hb_000453_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
309.35 276.922 38.8825 94.1685 308.692 1086.12
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
106.909 116.645 174.865 226.414 45.5782

CAGE analysis