Hb_000575_080

Information

Type -
Description -
Location Contig575: 105412-118254
Sequence    

Annotation

kegg
ID tcc:TCM_007490
description CD2-binding protein-related, putative
nr
ID XP_012078819.1
description PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 isoform X1 [Jatropha curcas]
swissprot
ID Q9VKV5
description CD2 antigen cytoplasmic tail-binding protein 2 homolog OS=Drosophila melanogaster GN=holn1 PE=1 SV=1
trembl
ID A0A067KKT5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13354 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49627: 108171-117928 , PASA_asmbl_49628: 108746-109153 , PASA_asmbl_49629: 109398-109508 , PASA_asmbl_49630: 113570-113790
cDNA
(Sanger)
(ID:Location)		 006_L16.ab1: 113221-117928

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000575_080 0.0 - - PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 isoform X1 [Jatropha curcas]
2 Hb_001307_140 0.1077566507 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Jatropha curcas]
3 Hb_000270_020 0.1100121202 - - hypothetical protein POPTR_0015s07630g [Populus trichocarpa]
4 Hb_050455_010 0.1265690657 - - PREDICTED: prosaposin isoform X2 [Jatropha curcas]
5 Hb_000088_020 0.1331704155 transcription factor TF Family: M-type hypothetical protein JCGZ_10946 [Jatropha curcas]
6 Hb_003299_090 0.1335491453 - - hypothetical protein PRUPE_ppa011647mg [Prunus persica]
7 Hb_007317_190 0.1338646937 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
8 Hb_005916_030 0.1340548566 - - PREDICTED: uncharacterized protein At2g29880-like [Jatropha curcas]
9 Hb_000977_310 0.1342810246 - - PREDICTED: gamma-tubulin complex component 2 isoform X4 [Jatropha curcas]
10 Hb_002046_040 0.1347714177 - - PREDICTED: topless-related protein 4 [Malus domestica]
11 Hb_000284_210 0.1349377275 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000568_040 0.1353942359 - - PREDICTED: mRNA-decapping enzyme subunit 2 [Jatropha curcas]
13 Hb_000453_270 0.1384778564 - - PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 [Propithecus coquereli]
14 Hb_000347_150 0.1394458216 - - Nucleolysin TIAR [Morus notabilis]
15 Hb_187739_020 0.1397837009 - - PREDICTED: B2 protein [Jatropha curcas]
16 Hb_005375_040 0.1398309445 - - dicer-1, putative [Ricinus communis]
17 Hb_002982_040 0.1441700349 - - mta/sah nucleosidase, putative [Ricinus communis]
18 Hb_001040_160 0.1478287231 - - glutaredoxin, grx, putative [Ricinus communis]
19 Hb_137403_010 0.1485840657 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
20 Hb_000333_100 0.1486335789 - - PREDICTED: tubulin--tyrosine ligase-like protein 12 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000575_080 Hb_000575_080 Hb_001307_140 Hb_001307_140 Hb_000575_080--Hb_001307_140 Hb_000270_020 Hb_000270_020 Hb_000575_080--Hb_000270_020 Hb_050455_010 Hb_050455_010 Hb_000575_080--Hb_050455_010 Hb_000088_020 Hb_000088_020 Hb_000575_080--Hb_000088_020 Hb_003299_090 Hb_003299_090 Hb_000575_080--Hb_003299_090 Hb_007317_190 Hb_007317_190 Hb_000575_080--Hb_007317_190 Hb_110364_010 Hb_110364_010 Hb_001307_140--Hb_110364_010 Hb_063047_010 Hb_063047_010 Hb_001307_140--Hb_063047_010 Hb_001040_160 Hb_001040_160 Hb_001307_140--Hb_001040_160 Hb_000568_040 Hb_000568_040 Hb_001307_140--Hb_000568_040 Hb_000453_270 Hb_000453_270 Hb_001307_140--Hb_000453_270 Hb_001943_010 Hb_001943_010 Hb_001307_140--Hb_001943_010 Hb_000347_150 Hb_000347_150 Hb_000270_020--Hb_000347_150 Hb_000270_020--Hb_003299_090 Hb_000270_020--Hb_001307_140 Hb_003073_210 Hb_003073_210 Hb_000270_020--Hb_003073_210 Hb_139859_010 Hb_139859_010 Hb_000270_020--Hb_139859_010 Hb_000069_160 Hb_000069_160 Hb_050455_010--Hb_000069_160 Hb_002982_040 Hb_002982_040 Hb_050455_010--Hb_002982_040 Hb_003847_080 Hb_003847_080 Hb_050455_010--Hb_003847_080 Hb_185830_020 Hb_185830_020 Hb_050455_010--Hb_185830_020 Hb_012305_050 Hb_012305_050 Hb_050455_010--Hb_012305_050 Hb_000849_070 Hb_000849_070 Hb_050455_010--Hb_000849_070 Hb_006913_040 Hb_006913_040 Hb_000088_020--Hb_006913_040 Hb_000333_100 Hb_000333_100 Hb_000088_020--Hb_000333_100 Hb_002942_160 Hb_002942_160 Hb_000088_020--Hb_002942_160 Hb_000866_030 Hb_000866_030 Hb_000088_020--Hb_000866_030 Hb_031862_180 Hb_031862_180 Hb_000088_020--Hb_031862_180 Hb_007643_050 Hb_007643_050 Hb_000088_020--Hb_007643_050 Hb_005635_010 Hb_005635_010 Hb_003299_090--Hb_005635_010 Hb_005914_090 Hb_005914_090 Hb_003299_090--Hb_005914_090 Hb_003299_090--Hb_000347_150 Hb_003299_090--Hb_001307_140 Hb_012016_020 Hb_012016_020 Hb_003299_090--Hb_012016_020 Hb_007317_190--Hb_000568_040 Hb_007317_190--Hb_006913_040 Hb_004108_140 Hb_004108_140 Hb_007317_190--Hb_004108_140 Hb_002232_170 Hb_002232_170 Hb_007317_190--Hb_002232_170 Hb_000522_090 Hb_000522_090 Hb_007317_190--Hb_000522_090 Hb_016657_010 Hb_016657_010 Hb_007317_190--Hb_016657_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.3545 77.9451 8.11524 27.2785 56.6309 185.026
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
75.7949 47.7576 42.6251 43.0303 17.5655

CAGE analysis