Hb_009848_030

Information

Type -
Description -
Location Contig9848: 55898-62253
Sequence    

Annotation

kegg
ID rcu:RCOM_1553230
description long-chain-fatty-acid CoA ligase, putative (EC:6.2.1.3)
nr
ID XP_002520615.1
description long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
swissprot
ID Q9LK39
description Probable acyl-activating enzyme 16, chloroplastic OS=Arabidopsis thaliana GN=AAE16 PE=2 SV=1
trembl
ID B9S3P6
description Long-chain-fatty-acid CoA ligase, putative OS=Ricinus communis GN=RCOM_1553230 PE=4 SV=1
Gene Ontology
ID GO:0003824
description probable acyl-activating enzyme chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009848_030 0.0 - - long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
2 Hb_000032_310 0.145036636 - - ring finger protein, putative [Ricinus communis]
3 Hb_001989_020 0.1483336417 - - hypothetical protein JCGZ_15521 [Jatropha curcas]
4 Hb_001396_260 0.1544376305 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
5 Hb_000521_170 0.1587350555 - - PREDICTED: callose synthase 1 [Jatropha curcas]
6 Hb_003656_120 0.1597791273 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3-like [Jatropha curcas]
7 Hb_009848_040 0.159810149 - - hypothetical protein B456_009G349600 [Gossypium raimondii]
8 Hb_001416_020 0.169515762 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
9 Hb_000283_150 0.1710473011 - - Ankyrin repeat family protein [Theobroma cacao]
10 Hb_000649_010 0.1716049446 - - PREDICTED: adagio protein 3 [Jatropha curcas]
11 Hb_003157_010 0.1775682967 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
12 Hb_006185_020 0.1834922781 - - PREDICTED: midasin [Jatropha curcas]
13 Hb_000808_070 0.1841813016 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
14 Hb_000236_080 0.1872344153 - - PREDICTED: small subunit processome component 20 homolog [Jatropha curcas]
15 Hb_004096_080 0.1881131195 - - PREDICTED: IST1 homolog [Jatropha curcas]
16 Hb_001301_230 0.1903060001 - - PREDICTED: uncharacterized protein LOC105632949 isoform X2 [Jatropha curcas]
17 Hb_003633_140 0.1914739096 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
18 Hb_084429_010 0.1929826302 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Populus euphratica]
19 Hb_002827_020 0.1953206428 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
20 Hb_031089_030 0.1960483986 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]

Gene co-expression network

sample Hb_009848_030 Hb_009848_030 Hb_000032_310 Hb_000032_310 Hb_009848_030--Hb_000032_310 Hb_001989_020 Hb_001989_020 Hb_009848_030--Hb_001989_020 Hb_001396_260 Hb_001396_260 Hb_009848_030--Hb_001396_260 Hb_000521_170 Hb_000521_170 Hb_009848_030--Hb_000521_170 Hb_003656_120 Hb_003656_120 Hb_009848_030--Hb_003656_120 Hb_009848_040 Hb_009848_040 Hb_009848_030--Hb_009848_040 Hb_000032_310--Hb_000521_170 Hb_006185_020 Hb_006185_020 Hb_000032_310--Hb_006185_020 Hb_000808_070 Hb_000808_070 Hb_000032_310--Hb_000808_070 Hb_003157_010 Hb_003157_010 Hb_000032_310--Hb_003157_010 Hb_144824_010 Hb_144824_010 Hb_000032_310--Hb_144824_010 Hb_000032_310--Hb_001989_020 Hb_001989_020--Hb_003157_010 Hb_000649_010 Hb_000649_010 Hb_001989_020--Hb_000649_010 Hb_000023_060 Hb_000023_060 Hb_001989_020--Hb_000023_060 Hb_001989_020--Hb_001396_260 Hb_007101_180 Hb_007101_180 Hb_001989_020--Hb_007101_180 Hb_084429_010 Hb_084429_010 Hb_001396_260--Hb_084429_010 Hb_015763_020 Hb_015763_020 Hb_001396_260--Hb_015763_020 Hb_004096_080 Hb_004096_080 Hb_001396_260--Hb_004096_080 Hb_031089_030 Hb_031089_030 Hb_001396_260--Hb_031089_030 Hb_001396_260--Hb_003157_010 Hb_009028_030 Hb_009028_030 Hb_001396_260--Hb_009028_030 Hb_000640_130 Hb_000640_130 Hb_000521_170--Hb_000640_130 Hb_001416_020 Hb_001416_020 Hb_000521_170--Hb_001416_020 Hb_000932_070 Hb_000932_070 Hb_000521_170--Hb_000932_070 Hb_011828_030 Hb_011828_030 Hb_000521_170--Hb_011828_030 Hb_011671_230 Hb_011671_230 Hb_000521_170--Hb_011671_230 Hb_000504_090 Hb_000504_090 Hb_003656_120--Hb_000504_090 Hb_005510_010 Hb_005510_010 Hb_003656_120--Hb_005510_010 Hb_003656_120--Hb_001396_260 Hb_011639_010 Hb_011639_010 Hb_003656_120--Hb_011639_010 Hb_003656_120--Hb_000032_310 Hb_012423_010 Hb_012423_010 Hb_009848_040--Hb_012423_010 Hb_009848_040--Hb_084429_010 Hb_009848_040--Hb_004096_080 Hb_002235_140 Hb_002235_140 Hb_009848_040--Hb_002235_140 Hb_006588_150 Hb_006588_150 Hb_009848_040--Hb_006588_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.41145 3.85498 0.233171 0.450014 2.47251 3.61458
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.694005 0.297671 0.270447 3.5483 0.400322

CAGE analysis