Hb_003656_120

Information

Type transcription factor
Description TF Family: NF-YA
Location Contig3656: 119015-124089
Sequence    

Annotation

kegg
ID rcu:RCOM_1046050
description Nuclear transcription factor Y subunit A-3, putative
nr
ID XP_012077008.1
description PREDICTED: nuclear transcription factor Y subunit A-3-like [Jatropha curcas]
swissprot
ID Q93ZH2
description Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2
trembl
ID B9RK30
description Nuclear transcription factor Y subunit A-3, putative OS=Ricinus communis GN=RCOM_1046050 PE=4 SV=1
Gene Ontology
ID GO:0016602
description nuclear transcription factor y subunit a-3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37637: 119334-119675 , PASA_asmbl_37639: 120947-121243 , PASA_asmbl_37640: 121432-123217 , PASA_asmbl_37641: 121445-123254
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003656_120 0.0 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3-like [Jatropha curcas]
2 Hb_009848_030 0.1597791273 - - long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
3 Hb_000504_090 0.185528073 - - PREDICTED: titin isoform X10 [Jatropha curcas]
4 Hb_005510_010 0.1871485295 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
5 Hb_001396_260 0.1882020256 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
6 Hb_011639_010 0.1928132701 - - -
7 Hb_000032_310 0.1982203411 - - ring finger protein, putative [Ricinus communis]
8 Hb_003633_140 0.2009852163 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
9 Hb_057451_010 0.2120076106 - - PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
10 Hb_002609_090 0.2127709285 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_031089_030 0.2157412076 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
12 Hb_000521_170 0.216522787 - - PREDICTED: callose synthase 1 [Jatropha curcas]
13 Hb_003157_010 0.2180977465 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
14 Hb_001416_020 0.2236160875 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
15 Hb_010584_010 0.2261773987 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
16 Hb_015763_020 0.2276264048 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
17 Hb_003236_010 0.2295990069 - - PREDICTED: uncharacterized protein LOC105635957 [Jatropha curcas]
18 Hb_005843_040 0.2302279244 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
19 Hb_000808_070 0.2306417531 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
20 Hb_004096_080 0.2316251939 - - PREDICTED: IST1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_003656_120 Hb_003656_120 Hb_009848_030 Hb_009848_030 Hb_003656_120--Hb_009848_030 Hb_000504_090 Hb_000504_090 Hb_003656_120--Hb_000504_090 Hb_005510_010 Hb_005510_010 Hb_003656_120--Hb_005510_010 Hb_001396_260 Hb_001396_260 Hb_003656_120--Hb_001396_260 Hb_011639_010 Hb_011639_010 Hb_003656_120--Hb_011639_010 Hb_000032_310 Hb_000032_310 Hb_003656_120--Hb_000032_310 Hb_009848_030--Hb_000032_310 Hb_001989_020 Hb_001989_020 Hb_009848_030--Hb_001989_020 Hb_009848_030--Hb_001396_260 Hb_000521_170 Hb_000521_170 Hb_009848_030--Hb_000521_170 Hb_009848_040 Hb_009848_040 Hb_009848_030--Hb_009848_040 Hb_002217_150 Hb_002217_150 Hb_000504_090--Hb_002217_150 Hb_003236_010 Hb_003236_010 Hb_000504_090--Hb_003236_010 Hb_005843_040 Hb_005843_040 Hb_000504_090--Hb_005843_040 Hb_007101_180 Hb_007101_180 Hb_000504_090--Hb_007101_180 Hb_006816_120 Hb_006816_120 Hb_000504_090--Hb_006816_120 Hb_001433_190 Hb_001433_190 Hb_000504_090--Hb_001433_190 Hb_057451_010 Hb_057451_010 Hb_005510_010--Hb_057451_010 Hb_018133_030 Hb_018133_030 Hb_005510_010--Hb_018133_030 Hb_009028_030 Hb_009028_030 Hb_005510_010--Hb_009028_030 Hb_001522_010 Hb_001522_010 Hb_005510_010--Hb_001522_010 Hb_003157_010 Hb_003157_010 Hb_005510_010--Hb_003157_010 Hb_000720_070 Hb_000720_070 Hb_005510_010--Hb_000720_070 Hb_084429_010 Hb_084429_010 Hb_001396_260--Hb_084429_010 Hb_015763_020 Hb_015763_020 Hb_001396_260--Hb_015763_020 Hb_004096_080 Hb_004096_080 Hb_001396_260--Hb_004096_080 Hb_031089_030 Hb_031089_030 Hb_001396_260--Hb_031089_030 Hb_001396_260--Hb_003157_010 Hb_001396_260--Hb_009028_030 Hb_007044_010 Hb_007044_010 Hb_011639_010--Hb_007044_010 Hb_008616_030 Hb_008616_030 Hb_011639_010--Hb_008616_030 Hb_004631_160 Hb_004631_160 Hb_011639_010--Hb_004631_160 Hb_011798_040 Hb_011798_040 Hb_011639_010--Hb_011798_040 Hb_011639_010--Hb_001522_010 Hb_000483_180 Hb_000483_180 Hb_011639_010--Hb_000483_180 Hb_000032_310--Hb_000521_170 Hb_006185_020 Hb_006185_020 Hb_000032_310--Hb_006185_020 Hb_000808_070 Hb_000808_070 Hb_000032_310--Hb_000808_070 Hb_000032_310--Hb_003157_010 Hb_144824_010 Hb_144824_010 Hb_000032_310--Hb_144824_010 Hb_000032_310--Hb_001989_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.39587 23.7387 0.421045 3.12408 30.4409 20.9226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.77374 2.54451 1.28026 16.9179 2.39415

CAGE analysis