Hb_002217_150

Information

Type -
Description -
Location Contig2217: 147564-154840
Sequence    

Annotation

kegg
ID rcu:RCOM_1002400
description hypothetical protein
nr
ID XP_012084140.1
description PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
swissprot
ID Q9VBX1
description Nuclear export mediator factor NEMF homolog OS=Drosophila melanogaster GN=Clbn PE=1 SV=2
trembl
ID A0A067JVQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19052 PE=4 SV=1
Gene Ontology
ID GO:0003676
description nuclear export mediator factor nemf

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22905: 147675-150673 , PASA_asmbl_22906: 150704-154263 , PASA_asmbl_22907: 154450-154787
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_150 0.0 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
2 Hb_003236_010 0.0835278405 - - PREDICTED: uncharacterized protein LOC105635957 [Jatropha curcas]
3 Hb_007849_020 0.0836586137 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
4 Hb_002471_210 0.0861080663 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
5 Hb_001433_190 0.0864012023 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
6 Hb_002291_070 0.0869140228 - - PREDICTED: dentin sialophosphoprotein [Prunus mume]
7 Hb_000227_380 0.08856959 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
8 Hb_002883_010 0.0905768342 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
9 Hb_006452_090 0.0941805354 - - PREDICTED: eukaryotic translation initiation factor 5B [Jatropha curcas]
10 Hb_000108_080 0.0955108528 - - PREDICTED: importin-5 [Jatropha curcas]
11 Hb_000529_260 0.0961907273 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
12 Hb_007904_220 0.0977346749 - - PREDICTED: protein SDA1 homolog isoform X1 [Jatropha curcas]
13 Hb_022250_110 0.1003356302 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
14 Hb_000239_070 0.1007980132 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
15 Hb_002652_040 0.1013585886 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
16 Hb_001028_070 0.102486981 - - PREDICTED: WD repeat-containing protein 75 isoform X2 [Jatropha curcas]
17 Hb_031754_010 0.1031056338 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
18 Hb_000594_020 0.1035760557 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
19 Hb_001221_150 0.1037045097 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
20 Hb_004970_160 0.1039053392 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002217_150 Hb_002217_150 Hb_003236_010 Hb_003236_010 Hb_002217_150--Hb_003236_010 Hb_007849_020 Hb_007849_020 Hb_002217_150--Hb_007849_020 Hb_002471_210 Hb_002471_210 Hb_002217_150--Hb_002471_210 Hb_001433_190 Hb_001433_190 Hb_002217_150--Hb_001433_190 Hb_002291_070 Hb_002291_070 Hb_002217_150--Hb_002291_070 Hb_000227_380 Hb_000227_380 Hb_002217_150--Hb_000227_380 Hb_000108_080 Hb_000108_080 Hb_003236_010--Hb_000108_080 Hb_006816_120 Hb_006816_120 Hb_003236_010--Hb_006816_120 Hb_002411_120 Hb_002411_120 Hb_003236_010--Hb_002411_120 Hb_027073_060 Hb_027073_060 Hb_003236_010--Hb_027073_060 Hb_001080_270 Hb_001080_270 Hb_003236_010--Hb_001080_270 Hb_006816_300 Hb_006816_300 Hb_007849_020--Hb_006816_300 Hb_007849_020--Hb_002471_210 Hb_000250_070 Hb_000250_070 Hb_007849_020--Hb_000250_070 Hb_007849_020--Hb_000227_380 Hb_002105_080 Hb_002105_080 Hb_007849_020--Hb_002105_080 Hb_007849_020--Hb_002291_070 Hb_002471_210--Hb_002291_070 Hb_000475_020 Hb_000475_020 Hb_002471_210--Hb_000475_020 Hb_001811_120 Hb_001811_120 Hb_002471_210--Hb_001811_120 Hb_002471_210--Hb_000250_070 Hb_001322_210 Hb_001322_210 Hb_002471_210--Hb_001322_210 Hb_001278_060 Hb_001278_060 Hb_001433_190--Hb_001278_060 Hb_005129_050 Hb_005129_050 Hb_001433_190--Hb_005129_050 Hb_002883_010 Hb_002883_010 Hb_001433_190--Hb_002883_010 Hb_001433_190--Hb_007849_020 Hb_001196_070 Hb_001196_070 Hb_001433_190--Hb_001196_070 Hb_006002_030 Hb_006002_030 Hb_001433_190--Hb_006002_030 Hb_000780_220 Hb_000780_220 Hb_002291_070--Hb_000780_220 Hb_002291_070--Hb_000475_020 Hb_002291_070--Hb_000250_070 Hb_002291_070--Hb_001322_210 Hb_003866_020 Hb_003866_020 Hb_000227_380--Hb_003866_020 Hb_175338_020 Hb_175338_020 Hb_000227_380--Hb_175338_020 Hb_000239_070 Hb_000239_070 Hb_000227_380--Hb_000239_070 Hb_000002_440 Hb_000002_440 Hb_000227_380--Hb_000002_440 Hb_000227_380--Hb_001080_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.1985 18.913 5.71288 6.88883 45.2912 38.9866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8632 7.15215 12.1059 23.427 14.556

CAGE analysis