Hb_000108_080

Information

Type -
Description -
Location Contig108: 67142-76823
Sequence    

Annotation

kegg
ID tcc:TCM_040022
description ARM repeat superfamily protein isoform 1
nr
ID XP_012067079.1
description PREDICTED: importin-5 [Jatropha curcas]
swissprot
ID Q8BKC5
description Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3
trembl
ID A0A067LDC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01877 PE=4 SV=1
Gene Ontology
ID GO:0005618
description importin-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02381: 65473-76548 , PASA_asmbl_02382: 68144-68422 , PASA_asmbl_02383: 66716-67398
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000108_080 0.0 - - PREDICTED: importin-5 [Jatropha curcas]
2 Hb_031069_020 0.0882839787 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
3 Hb_003236_010 0.0885105619 - - PREDICTED: uncharacterized protein LOC105635957 [Jatropha curcas]
4 Hb_004037_030 0.0892741894 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
5 Hb_000640_200 0.0908049096 - - hypothetical protein RCOM_1346600 [Ricinus communis]
6 Hb_005462_020 0.0914072112 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
7 Hb_022250_110 0.0933522789 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
8 Hb_078477_040 0.0934026562 - - nuclear movement protein nudc, putative [Ricinus communis]
9 Hb_010128_120 0.0948128249 - - hypothetical protein JCGZ_23167 [Jatropha curcas]
10 Hb_002217_150 0.0955108528 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
11 Hb_007849_020 0.0956094801 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
12 Hb_002471_210 0.0985192512 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
13 Hb_006882_010 0.0994599036 - - PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis sativus]
14 Hb_007904_180 0.0996851047 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]
15 Hb_006816_300 0.1006374225 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
16 Hb_003866_020 0.1007972268 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000239_070 0.1009012562 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
18 Hb_004970_160 0.1011632983 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
19 Hb_000504_150 0.1013196939 - - PREDICTED: nuclear pore complex protein GP210 [Jatropha curcas]
20 Hb_000475_020 0.1013405207 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000108_080 Hb_000108_080 Hb_031069_020 Hb_031069_020 Hb_000108_080--Hb_031069_020 Hb_003236_010 Hb_003236_010 Hb_000108_080--Hb_003236_010 Hb_004037_030 Hb_004037_030 Hb_000108_080--Hb_004037_030 Hb_000640_200 Hb_000640_200 Hb_000108_080--Hb_000640_200 Hb_005462_020 Hb_005462_020 Hb_000108_080--Hb_005462_020 Hb_022250_110 Hb_022250_110 Hb_000108_080--Hb_022250_110 Hb_078477_040 Hb_078477_040 Hb_031069_020--Hb_078477_040 Hb_001901_080 Hb_001901_080 Hb_031069_020--Hb_001901_080 Hb_001731_020 Hb_001731_020 Hb_031069_020--Hb_001731_020 Hb_031069_020--Hb_000640_200 Hb_006588_050 Hb_006588_050 Hb_031069_020--Hb_006588_050 Hb_006501_020 Hb_006501_020 Hb_031069_020--Hb_006501_020 Hb_002217_150 Hb_002217_150 Hb_003236_010--Hb_002217_150 Hb_006816_120 Hb_006816_120 Hb_003236_010--Hb_006816_120 Hb_002411_120 Hb_002411_120 Hb_003236_010--Hb_002411_120 Hb_027073_060 Hb_027073_060 Hb_003236_010--Hb_027073_060 Hb_001080_270 Hb_001080_270 Hb_003236_010--Hb_001080_270 Hb_007904_180 Hb_007904_180 Hb_004037_030--Hb_007904_180 Hb_000002_440 Hb_000002_440 Hb_004037_030--Hb_000002_440 Hb_000699_250 Hb_000699_250 Hb_004037_030--Hb_000699_250 Hb_000096_180 Hb_000096_180 Hb_004037_030--Hb_000096_180 Hb_000239_070 Hb_000239_070 Hb_004037_030--Hb_000239_070 Hb_042487_010 Hb_042487_010 Hb_004037_030--Hb_042487_010 Hb_004899_070 Hb_004899_070 Hb_000640_200--Hb_004899_070 Hb_000640_200--Hb_006501_020 Hb_057451_010 Hb_057451_010 Hb_000640_200--Hb_057451_010 Hb_000640_200--Hb_006588_050 Hb_000813_100 Hb_000813_100 Hb_000640_200--Hb_000813_100 Hb_005462_020--Hb_078477_040 Hb_004970_160 Hb_004970_160 Hb_005462_020--Hb_004970_160 Hb_006829_090 Hb_006829_090 Hb_005462_020--Hb_006829_090 Hb_006002_030 Hb_006002_030 Hb_005462_020--Hb_006002_030 Hb_005462_020--Hb_022250_110 Hb_000120_620 Hb_000120_620 Hb_005462_020--Hb_000120_620 Hb_000329_490 Hb_000329_490 Hb_022250_110--Hb_000329_490 Hb_000209_070 Hb_000209_070 Hb_022250_110--Hb_000209_070 Hb_000029_320 Hb_000029_320 Hb_022250_110--Hb_000029_320 Hb_022250_110--Hb_078477_040 Hb_003018_160 Hb_003018_160 Hb_022250_110--Hb_003018_160 Hb_022250_110--Hb_006002_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.0252 24.7677 6.41904 10.6464 47.7962 54.5323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1424 5.34986 9.45071 18.6285 11.9448

CAGE analysis