Hb_011798_040

Information

Type -
Description -
Location Contig11798: 19337-20333
Sequence    

Annotation

kegg
ID mdm:103449948
description protein kinase and PP2C-like domain-containing protein
nr
ID AFW80872.1
description hypothetical protein ZEAMMB73_778895 [Zea mays]
swissprot
ID Q5JJY4
description Protein kinase and PP2C-like domain-containing protein OS=Oryza sativa subsp. japonica GN=Os01g0541900 PE=2 SV=1
trembl
ID K7VCM9
description Orphans transcription factor OS=Zea mays GN=Orphan343 PE=2 SV=1
Gene Ontology
ID GO:0005622
description protein kinase and pp2c-like domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011798_040 0.0 - - hypothetical protein ZEAMMB73_778895 [Zea mays]
2 Hb_005843_040 0.1257703322 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
3 Hb_001141_460 0.1281201615 - - PREDICTED: heat shock 70 kDa protein 8 [Jatropha curcas]
4 Hb_000640_200 0.1299360843 - - hypothetical protein RCOM_1346600 [Ricinus communis]
5 Hb_057451_010 0.135894056 - - PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
6 Hb_003236_010 0.1368885125 - - PREDICTED: uncharacterized protein LOC105635957 [Jatropha curcas]
7 Hb_003157_010 0.1406438647 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
8 Hb_001522_010 0.1444191306 - - PREDICTED: nucleolar protein 14 isoform X1 [Jatropha curcas]
9 Hb_002084_040 0.1483406012 - - PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Jatropha curcas]
10 Hb_000108_080 0.1486404776 - - PREDICTED: importin-5 [Jatropha curcas]
11 Hb_000504_150 0.1495264507 - - PREDICTED: nuclear pore complex protein GP210 [Jatropha curcas]
12 Hb_031069_020 0.1513215074 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
13 Hb_007904_080 0.1522269757 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
14 Hb_006501_020 0.1536643596 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
15 Hb_027073_060 0.1536648367 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
16 Hb_003866_020 0.1544736557 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000365_060 0.1555172059 - - 5'->3' exoribonuclease, putative [Ricinus communis]
18 Hb_000080_170 0.1561124989 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
19 Hb_111985_080 0.1574415937 - - PREDICTED: pentatricopeptide repeat-containing protein At1g19720 [Jatropha curcas]
20 Hb_002188_090 0.1578030022 - - PREDICTED: pre-mRNA-processing protein 40A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011798_040 Hb_011798_040 Hb_005843_040 Hb_005843_040 Hb_011798_040--Hb_005843_040 Hb_001141_460 Hb_001141_460 Hb_011798_040--Hb_001141_460 Hb_000640_200 Hb_000640_200 Hb_011798_040--Hb_000640_200 Hb_057451_010 Hb_057451_010 Hb_011798_040--Hb_057451_010 Hb_003236_010 Hb_003236_010 Hb_011798_040--Hb_003236_010 Hb_003157_010 Hb_003157_010 Hb_011798_040--Hb_003157_010 Hb_000365_060 Hb_000365_060 Hb_005843_040--Hb_000365_060 Hb_002105_080 Hb_002105_080 Hb_005843_040--Hb_002105_080 Hb_009421_030 Hb_009421_030 Hb_005843_040--Hb_009421_030 Hb_007904_180 Hb_007904_180 Hb_005843_040--Hb_007904_180 Hb_000108_080 Hb_000108_080 Hb_005843_040--Hb_000108_080 Hb_005843_040--Hb_000640_200 Hb_001141_460--Hb_005843_040 Hb_000465_480 Hb_000465_480 Hb_001141_460--Hb_000465_480 Hb_001141_460--Hb_003236_010 Hb_000080_170 Hb_000080_170 Hb_001141_460--Hb_000080_170 Hb_027073_060 Hb_027073_060 Hb_001141_460--Hb_027073_060 Hb_004899_070 Hb_004899_070 Hb_000640_200--Hb_004899_070 Hb_006501_020 Hb_006501_020 Hb_000640_200--Hb_006501_020 Hb_000640_200--Hb_057451_010 Hb_006588_050 Hb_006588_050 Hb_000640_200--Hb_006588_050 Hb_000813_100 Hb_000813_100 Hb_000640_200--Hb_000813_100 Hb_031069_020 Hb_031069_020 Hb_000640_200--Hb_031069_020 Hb_009028_030 Hb_009028_030 Hb_057451_010--Hb_009028_030 Hb_057451_010--Hb_003157_010 Hb_003710_040 Hb_003710_040 Hb_057451_010--Hb_003710_040 Hb_057451_010--Hb_004899_070 Hb_000313_340 Hb_000313_340 Hb_057451_010--Hb_000313_340 Hb_002217_150 Hb_002217_150 Hb_003236_010--Hb_002217_150 Hb_003236_010--Hb_000108_080 Hb_006816_120 Hb_006816_120 Hb_003236_010--Hb_006816_120 Hb_002411_120 Hb_002411_120 Hb_003236_010--Hb_002411_120 Hb_003236_010--Hb_027073_060 Hb_001080_270 Hb_001080_270 Hb_003236_010--Hb_001080_270 Hb_003157_010--Hb_006501_020 Hb_000808_070 Hb_000808_070 Hb_003157_010--Hb_000808_070 Hb_003157_010--Hb_009028_030 Hb_003157_010--Hb_000640_200 Hb_001989_020 Hb_001989_020 Hb_003157_010--Hb_001989_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.88509 5.83819 1.13446 0.509293 7.53966 6.97456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.04462 0.13675 1.78823 2.72012 2.45918

CAGE analysis