Hb_000080_170

Information

Type transcription factor
Description TF Family: RWP-RK
Location Contig80: 124461-128947
Sequence    

Annotation

kegg
ID rcu:RCOM_1203530
description transcription factor, putative
nr
ID XP_002530298.1
description transcription factor, putative [Ricinus communis]
swissprot
ID O22864
description Protein NLP8 OS=Arabidopsis thaliana GN=NLP8 PE=2 SV=1
trembl
ID B9SWC9
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1203530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58741: 125932-128650 , PASA_asmbl_58743: 128681-129011 , PASA_asmbl_58744: 129054-129815
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000080_170 0.0 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
2 Hb_003994_100 0.0743595114 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
3 Hb_000832_320 0.08777387 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
4 Hb_006663_040 0.0921309145 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
5 Hb_004543_030 0.1016666007 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
6 Hb_018133_050 0.1016818877 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
7 Hb_015475_020 0.1066140311 - - importin beta-1, putative [Ricinus communis]
8 Hb_005539_090 0.1123623361 transcription factor TF Family: PHD PREDICTED: methyl-CpG-binding domain-containing protein 9 isoform X1 [Jatropha curcas]
9 Hb_000162_020 0.1129436275 - - protein translocase, putative [Ricinus communis]
10 Hb_052764_060 0.1137862377 - - XPA-binding protein, putative [Ricinus communis]
11 Hb_010578_060 0.1157729327 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
12 Hb_000189_100 0.1161404774 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
13 Hb_004884_010 0.1167027738 - - PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Jatropha curcas]
14 Hb_002762_130 0.1175454674 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
15 Hb_000345_150 0.119460886 - - PREDICTED: uncharacterized protein LOC105647517 isoform X1 [Jatropha curcas]
16 Hb_001999_280 0.1201915853 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_034243_020 0.1213715197 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]
18 Hb_144824_010 0.1216083319 - - hypothetical protein POPTR_0019s02110g [Populus trichocarpa]
19 Hb_026198_040 0.1216504708 - - PREDICTED: uncharacterized protein LOC105628901 [Jatropha curcas]
20 Hb_000544_060 0.1223010797 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]

Gene co-expression network

sample Hb_000080_170 Hb_000080_170 Hb_003994_100 Hb_003994_100 Hb_000080_170--Hb_003994_100 Hb_000832_320 Hb_000832_320 Hb_000080_170--Hb_000832_320 Hb_006663_040 Hb_006663_040 Hb_000080_170--Hb_006663_040 Hb_004543_030 Hb_004543_030 Hb_000080_170--Hb_004543_030 Hb_018133_050 Hb_018133_050 Hb_000080_170--Hb_018133_050 Hb_015475_020 Hb_015475_020 Hb_000080_170--Hb_015475_020 Hb_005539_090 Hb_005539_090 Hb_003994_100--Hb_005539_090 Hb_000345_150 Hb_000345_150 Hb_003994_100--Hb_000345_150 Hb_000012_140 Hb_000012_140 Hb_003994_100--Hb_000012_140 Hb_003994_100--Hb_006663_040 Hb_052764_060 Hb_052764_060 Hb_003994_100--Hb_052764_060 Hb_000832_320--Hb_006663_040 Hb_000832_320--Hb_018133_050 Hb_004480_040 Hb_004480_040 Hb_000832_320--Hb_004480_040 Hb_000832_320--Hb_052764_060 Hb_000544_060 Hb_000544_060 Hb_000832_320--Hb_000544_060 Hb_000959_040 Hb_000959_040 Hb_000832_320--Hb_000959_040 Hb_006663_040--Hb_052764_060 Hb_006663_040--Hb_018133_050 Hb_000189_100 Hb_000189_100 Hb_006663_040--Hb_000189_100 Hb_157966_010 Hb_157966_010 Hb_006663_040--Hb_157966_010 Hb_006663_040--Hb_000544_060 Hb_034243_020 Hb_034243_020 Hb_004543_030--Hb_034243_020 Hb_007576_120 Hb_007576_120 Hb_004543_030--Hb_007576_120 Hb_002524_040 Hb_002524_040 Hb_004543_030--Hb_002524_040 Hb_004718_010 Hb_004718_010 Hb_004543_030--Hb_004718_010 Hb_000997_030 Hb_000997_030 Hb_004543_030--Hb_000997_030 Hb_010315_090 Hb_010315_090 Hb_004543_030--Hb_010315_090 Hb_018133_050--Hb_157966_010 Hb_018133_050--Hb_052764_060 Hb_018133_050--Hb_000959_040 Hb_003284_030 Hb_003284_030 Hb_018133_050--Hb_003284_030 Hb_001221_160 Hb_001221_160 Hb_015475_020--Hb_001221_160 Hb_002349_050 Hb_002349_050 Hb_015475_020--Hb_002349_050 Hb_003858_090 Hb_003858_090 Hb_015475_020--Hb_003858_090 Hb_133047_010 Hb_133047_010 Hb_015475_020--Hb_133047_010 Hb_001080_270 Hb_001080_270 Hb_015475_020--Hb_001080_270 Hb_000753_100 Hb_000753_100 Hb_015475_020--Hb_000753_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.1302 42.285 7.2599 4.76563 27.6918 25.8862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.31236 4.70784 12.4675 11.0577 19.4036

CAGE analysis