Hb_004631_160

Information

Type transcription factor
Description TF Family: HB
Location Contig4631: 116733-118364
Sequence    

Annotation

kegg
ID pop:POPTR_0005s07290g
description POPTRDRAFT_715838; hypothetical protein
nr
ID XP_012081624.1
description PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
swissprot
ID P46668
description Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana GN=ATHB-6 PE=1 SV=1
trembl
ID A0A067KD47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18664 PE=4 SV=1
Gene Ontology
ID GO:0003677
description homeobox-leucine zipper protein athb-6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43867: 116410-119096
cDNA
(Sanger)
(ID:Location)		 002_D14.ab1: 116410-116908 , 008_C10.ab1: 116410-117143 , 020_E11.ab1: 116414-117112 , 044_J07.ab1: 116410-116908 , 049_O16.ab1: 116410-116908 , 053_A13.ab1: 116414-117130

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004631_160 0.0 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
2 Hb_008616_030 0.1574551978 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
3 Hb_003398_010 0.1578986062 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
4 Hb_000617_040 0.1635032592 - - PREDICTED: uncharacterized protein LOC105647487 isoform X2 [Jatropha curcas]
5 Hb_007044_010 0.1743214979 - - -
6 Hb_011639_010 0.1771114963 - - -
7 Hb_000205_070 0.17980532 - - kinase, putative [Ricinus communis]
8 Hb_000212_130 0.1816424633 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000176_060 0.1880449583 - - unnamed protein product [Vitis vinifera]
10 Hb_009189_030 0.1883836941 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
11 Hb_000101_210 0.1902574631 - - PREDICTED: uncharacterized protein LOC105646445 [Jatropha curcas]
12 Hb_003043_060 0.1964348682 - - -
13 Hb_001247_140 0.1978871607 - - -
14 Hb_041237_010 0.1992975038 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003299_080 0.2022935946 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
16 Hb_003337_070 0.2065538924 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
17 Hb_000189_420 0.2082880318 - - PREDICTED: uncharacterized protein LOC105647665 [Jatropha curcas]
18 Hb_003222_010 0.2084028821 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
19 Hb_010584_010 0.2084229475 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
20 Hb_003816_020 0.2091499425 - - hypothetical protein POPTR_0017s05940g [Populus trichocarpa]

Gene co-expression network

sample Hb_004631_160 Hb_004631_160 Hb_008616_030 Hb_008616_030 Hb_004631_160--Hb_008616_030 Hb_003398_010 Hb_003398_010 Hb_004631_160--Hb_003398_010 Hb_000617_040 Hb_000617_040 Hb_004631_160--Hb_000617_040 Hb_007044_010 Hb_007044_010 Hb_004631_160--Hb_007044_010 Hb_011639_010 Hb_011639_010 Hb_004631_160--Hb_011639_010 Hb_000205_070 Hb_000205_070 Hb_004631_160--Hb_000205_070 Hb_008616_030--Hb_007044_010 Hb_008616_030--Hb_011639_010 Hb_012395_080 Hb_012395_080 Hb_008616_030--Hb_012395_080 Hb_007223_010 Hb_007223_010 Hb_008616_030--Hb_007223_010 Hb_119886_040 Hb_119886_040 Hb_008616_030--Hb_119886_040 Hb_041237_010 Hb_041237_010 Hb_003398_010--Hb_041237_010 Hb_003398_010--Hb_000617_040 Hb_003299_080 Hb_003299_080 Hb_003398_010--Hb_003299_080 Hb_000212_130 Hb_000212_130 Hb_003398_010--Hb_000212_130 Hb_031089_030 Hb_031089_030 Hb_003398_010--Hb_031089_030 Hb_001247_140 Hb_001247_140 Hb_000617_040--Hb_001247_140 Hb_000617_040--Hb_031089_030 Hb_007257_050 Hb_007257_050 Hb_000617_040--Hb_007257_050 Hb_000617_040--Hb_041237_010 Hb_007044_010--Hb_011639_010 Hb_002311_230 Hb_002311_230 Hb_007044_010--Hb_002311_230 Hb_001522_010 Hb_001522_010 Hb_007044_010--Hb_001522_010 Hb_031073_010 Hb_031073_010 Hb_007044_010--Hb_031073_010 Hb_011798_040 Hb_011798_040 Hb_011639_010--Hb_011798_040 Hb_011639_010--Hb_001522_010 Hb_000483_180 Hb_000483_180 Hb_011639_010--Hb_000483_180 Hb_027255_010 Hb_027255_010 Hb_000205_070--Hb_027255_010 Hb_003337_070 Hb_003337_070 Hb_000205_070--Hb_003337_070 Hb_000176_060 Hb_000176_060 Hb_000205_070--Hb_000176_060 Hb_009189_030 Hb_009189_030 Hb_000205_070--Hb_009189_030 Hb_022452_010 Hb_022452_010 Hb_000205_070--Hb_022452_010 Hb_006745_020 Hb_006745_020 Hb_000205_070--Hb_006745_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
712.733 839.857 47.042 124.457 1478.8 1119.56
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.7886 15.1576 5.68227 185.589 31.2926

CAGE analysis