Hb_027255_010

Information

Type transcription factor
Description TF Family: Orphans
Location Contig27255: 25547-29575
Sequence    

Annotation

kegg
ID rcu:RCOM_0568960
description hypothetical protein
nr
ID XP_002530784.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LVI4
description Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B PE=1 SV=1
trembl
ID B9SXR5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0568960 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027255_010 0.0 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
2 Hb_000205_070 0.1506453437 - - kinase, putative [Ricinus communis]
3 Hb_009686_010 0.1514412133 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
4 Hb_009189_030 0.1628322545 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
5 Hb_114868_010 0.1884333384 - - -
6 Hb_002326_060 0.2042346934 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
7 Hb_000853_290 0.2064624128 - - PREDICTED: uncharacterized protein LOC105642585 [Jatropha curcas]
8 Hb_006745_020 0.2105533185 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
9 Hb_003647_120 0.2187378419 - - 18.2 kDa class I heat shock family protein [Populus trichocarpa]
10 Hb_182807_020 0.2202856279 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
11 Hb_000176_060 0.2218987631 - - unnamed protein product [Vitis vinifera]
12 Hb_001279_230 0.2258751272 - - PREDICTED: class I heat shock protein-like [Jatropha curcas]
13 Hb_003337_070 0.2289435431 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
14 Hb_000398_130 0.2295536101 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
15 Hb_184326_010 0.2315763891 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
16 Hb_001723_110 0.2320751863 - - PREDICTED: solute carrier family 25 member 44-like isoform X2 [Malus domestica]
17 Hb_022452_010 0.2426710543 - - -
18 Hb_008053_020 0.2489392404 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_004631_160 0.2525768806 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
20 Hb_003222_010 0.2548646578 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]

Gene co-expression network

sample Hb_027255_010 Hb_027255_010 Hb_000205_070 Hb_000205_070 Hb_027255_010--Hb_000205_070 Hb_009686_010 Hb_009686_010 Hb_027255_010--Hb_009686_010 Hb_009189_030 Hb_009189_030 Hb_027255_010--Hb_009189_030 Hb_114868_010 Hb_114868_010 Hb_027255_010--Hb_114868_010 Hb_002326_060 Hb_002326_060 Hb_027255_010--Hb_002326_060 Hb_000853_290 Hb_000853_290 Hb_027255_010--Hb_000853_290 Hb_003337_070 Hb_003337_070 Hb_000205_070--Hb_003337_070 Hb_000176_060 Hb_000176_060 Hb_000205_070--Hb_000176_060 Hb_000205_070--Hb_009189_030 Hb_022452_010 Hb_022452_010 Hb_000205_070--Hb_022452_010 Hb_006745_020 Hb_006745_020 Hb_000205_070--Hb_006745_020 Hb_009686_010--Hb_114868_010 Hb_001899_010 Hb_001899_010 Hb_009686_010--Hb_001899_010 Hb_003529_220 Hb_003529_220 Hb_009686_010--Hb_003529_220 Hb_005799_030 Hb_005799_030 Hb_009686_010--Hb_005799_030 Hb_003529_210 Hb_003529_210 Hb_009686_010--Hb_003529_210 Hb_003222_010 Hb_003222_010 Hb_009189_030--Hb_003222_010 Hb_009189_030--Hb_000853_290 Hb_004631_160 Hb_004631_160 Hb_009189_030--Hb_004631_160 Hb_009189_030--Hb_003337_070 Hb_001584_230 Hb_001584_230 Hb_114868_010--Hb_001584_230 Hb_081636_010 Hb_081636_010 Hb_114868_010--Hb_081636_010 Hb_114868_010--Hb_005799_030 Hb_029866_010 Hb_029866_010 Hb_114868_010--Hb_029866_010 Hb_001135_270 Hb_001135_270 Hb_114868_010--Hb_001135_270 Hb_001159_210 Hb_001159_210 Hb_002326_060--Hb_001159_210 Hb_134732_010 Hb_134732_010 Hb_002326_060--Hb_134732_010 Hb_002326_060--Hb_000176_060 Hb_000001_160 Hb_000001_160 Hb_002326_060--Hb_000001_160 Hb_001935_190 Hb_001935_190 Hb_002326_060--Hb_001935_190 Hb_000038_150 Hb_000038_150 Hb_002326_060--Hb_000038_150 Hb_000853_290--Hb_006745_020 Hb_000853_300 Hb_000853_300 Hb_000853_290--Hb_000853_300 Hb_182807_020 Hb_182807_020 Hb_000853_290--Hb_182807_020 Hb_025194_030 Hb_025194_030 Hb_000853_290--Hb_025194_030 Hb_007044_010 Hb_007044_010 Hb_000853_290--Hb_007044_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.293946 0.461437 0 0.0871641 1.85215 1.14973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis