Hb_003529_220

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig3529: 226691-229838
Sequence    

Annotation

kegg
ID mdm:103412199
description protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like
nr
ID KDP42425.1
description hypothetical protein JCGZ_00222 [Jatropha curcas]
swissprot
ID O82500
description Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1
trembl
ID A0A067LD49
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00222 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein suppressor of npr1- constitutive 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003529_220 0.0 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
2 Hb_001899_010 0.1568287666 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
3 Hb_179763_010 0.174645777 - - -
4 Hb_108404_010 0.2021741081 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
5 Hb_002673_050 0.2037813165 - - -
6 Hb_091369_010 0.2040893396 - - -
7 Hb_008473_010 0.2042452543 - - PREDICTED: laccase-14-like [Jatropha curcas]
8 Hb_128287_010 0.2045275218 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_000944_010 0.2062202599 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
10 Hb_003400_030 0.206240805 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
11 Hb_002400_450 0.2072791534 - - PREDICTED: protein MEMO1 isoform X2 [Sesamum indicum]
12 Hb_005799_030 0.2072962962 - - PREDICTED: uncharacterized protein LOC103926623 [Pyrus x bretschneideri]
13 Hb_000260_190 0.2078538839 - - -
14 Hb_034667_010 0.2088918616 - - -
15 Hb_008151_030 0.2106612885 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_010399_020 0.2118081742 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
17 Hb_001584_230 0.2130523593 - - invertase/pectin methylesterase inhibitor family protein [Populus trichocarpa]
18 Hb_009686_010 0.2139222001 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
19 Hb_000123_390 0.2150718964 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000204_180 0.2152237769 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_003529_220 Hb_003529_220 Hb_001899_010 Hb_001899_010 Hb_003529_220--Hb_001899_010 Hb_179763_010 Hb_179763_010 Hb_003529_220--Hb_179763_010 Hb_108404_010 Hb_108404_010 Hb_003529_220--Hb_108404_010 Hb_002673_050 Hb_002673_050 Hb_003529_220--Hb_002673_050 Hb_091369_010 Hb_091369_010 Hb_003529_220--Hb_091369_010 Hb_008473_010 Hb_008473_010 Hb_003529_220--Hb_008473_010 Hb_003529_210 Hb_003529_210 Hb_001899_010--Hb_003529_210 Hb_005799_030 Hb_005799_030 Hb_001899_010--Hb_005799_030 Hb_001135_270 Hb_001135_270 Hb_001899_010--Hb_001135_270 Hb_001899_010--Hb_179763_010 Hb_066784_020 Hb_066784_020 Hb_001899_010--Hb_066784_020 Hb_179763_010--Hb_005799_030 Hb_179763_010--Hb_001135_270 Hb_179763_010--Hb_003529_210 Hb_001584_230 Hb_001584_230 Hb_179763_010--Hb_001584_230 Hb_128287_010 Hb_128287_010 Hb_108404_010--Hb_128287_010 Hb_108404_010--Hb_002673_050 Hb_108404_010--Hb_091369_010 Hb_108404_010--Hb_008473_010 Hb_000204_180 Hb_000204_180 Hb_108404_010--Hb_000204_180 Hb_000944_010 Hb_000944_010 Hb_108404_010--Hb_000944_010 Hb_002673_050--Hb_091369_010 Hb_002673_050--Hb_008473_010 Hb_002673_050--Hb_000944_010 Hb_003400_030 Hb_003400_030 Hb_002673_050--Hb_003400_030 Hb_002400_450 Hb_002400_450 Hb_002673_050--Hb_002400_450 Hb_000260_190 Hb_000260_190 Hb_002673_050--Hb_000260_190 Hb_091369_010--Hb_008473_010 Hb_091369_010--Hb_000944_010 Hb_091369_010--Hb_003400_030 Hb_091369_010--Hb_002400_450 Hb_091369_010--Hb_000260_190 Hb_008473_010--Hb_000944_010 Hb_008473_010--Hb_003400_030 Hb_008473_010--Hb_002400_450 Hb_008473_010--Hb_000260_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0854725 0.0212104 0.0158656 0.0330754 1.42921 1.08325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.019114 0 0 0.040313

CAGE analysis