Hb_005799_030

Information

Type -
Description -
Location Contig5799: 33858-46049
Sequence    

Annotation

kegg
ID pxb:103926623
description uncharacterized LOC103926623
nr
ID XP_009333705.1
description PREDICTED: uncharacterized protein LOC103926623 [Pyrus x bretschneideri]
swissprot
ID -
description -
trembl
ID A0A0D2QY55
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G234500 PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein CICLE_v10033628mg, partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005799_030 0.0 - - PREDICTED: uncharacterized protein LOC103926623 [Pyrus x bretschneideri]
2 Hb_001135_270 0.0177257677 - - -
3 Hb_081636_010 0.0595518395 - - -
4 Hb_001584_230 0.0641452861 - - invertase/pectin methylesterase inhibitor family protein [Populus trichocarpa]
5 Hb_000123_390 0.1211109471 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001899_010 0.1299451455 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
7 Hb_179763_010 0.1376104523 - - -
8 Hb_067345_050 0.1465248537 - - PREDICTED: uncharacterized protein LOC104107076 [Nicotiana tomentosiformis]
9 Hb_003529_210 0.1610233521 - - -
10 Hb_066784_020 0.168949411 - - conserved hypothetical protein [Ricinus communis]
11 Hb_114868_010 0.1751990781 - - -
12 Hb_029866_010 0.1835185404 - - -
13 Hb_013983_010 0.1922533884 - - hypothetical protein PRUPE_ppa016763mg, partial [Prunus persica]
14 Hb_003529_220 0.2072962962 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
15 Hb_009686_010 0.2145078545 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
16 Hb_005116_020 0.2182888306 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Sesamum indicum]
17 Hb_001159_210 0.2192362603 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
18 Hb_000345_480 0.2229386706 - - cyclin-dependent protein kinase, putative [Ricinus communis]
19 Hb_033225_020 0.2315820882 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003494_260 0.2398790499 - - -

Gene co-expression network

sample Hb_005799_030 Hb_005799_030 Hb_001135_270 Hb_001135_270 Hb_005799_030--Hb_001135_270 Hb_081636_010 Hb_081636_010 Hb_005799_030--Hb_081636_010 Hb_001584_230 Hb_001584_230 Hb_005799_030--Hb_001584_230 Hb_000123_390 Hb_000123_390 Hb_005799_030--Hb_000123_390 Hb_001899_010 Hb_001899_010 Hb_005799_030--Hb_001899_010 Hb_179763_010 Hb_179763_010 Hb_005799_030--Hb_179763_010 Hb_001135_270--Hb_081636_010 Hb_001135_270--Hb_001584_230 Hb_067345_050 Hb_067345_050 Hb_001135_270--Hb_067345_050 Hb_001135_270--Hb_000123_390 Hb_001135_270--Hb_001899_010 Hb_081636_010--Hb_001584_230 Hb_013983_010 Hb_013983_010 Hb_081636_010--Hb_013983_010 Hb_081636_010--Hb_067345_050 Hb_029866_010 Hb_029866_010 Hb_081636_010--Hb_029866_010 Hb_001584_230--Hb_000123_390 Hb_001584_230--Hb_029866_010 Hb_001584_230--Hb_001899_010 Hb_000123_390--Hb_081636_010 Hb_000123_390--Hb_001899_010 Hb_000123_390--Hb_179763_010 Hb_003529_210 Hb_003529_210 Hb_001899_010--Hb_003529_210 Hb_001899_010--Hb_179763_010 Hb_003529_220 Hb_003529_220 Hb_001899_010--Hb_003529_220 Hb_066784_020 Hb_066784_020 Hb_001899_010--Hb_066784_020 Hb_179763_010--Hb_001135_270 Hb_179763_010--Hb_003529_210 Hb_179763_010--Hb_001584_230 Hb_179763_010--Hb_003529_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0421081 0 0 0 0.188987 0.131878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis