Hb_067345_050

Information

Type -
Description -
Location Contig67345: 30778-31164
Sequence    

Annotation

kegg
ID vvi:104879515
description uncharacterized LOC104879515
nr
ID XP_009614069.1
description PREDICTED: uncharacterized protein LOC104107076 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID A5BZ02
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037728 PE=4 SV=1
Gene Ontology
ID GO:0016301
description PREDICTED: uncharacterized protein LOC104107076

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_067345_050 0.0 - - PREDICTED: uncharacterized protein LOC104107076 [Nicotiana tomentosiformis]
2 Hb_066784_020 0.0914500419 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001135_270 0.1312805643 - - -
4 Hb_003529_210 0.1358141478 - - -
5 Hb_081636_010 0.1419330188 - - -
6 Hb_005799_030 0.1465248537 - - PREDICTED: uncharacterized protein LOC103926623 [Pyrus x bretschneideri]
7 Hb_182310_010 0.1542342912 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
8 Hb_000563_280 0.1625431753 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
9 Hb_001899_010 0.1843410313 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
10 Hb_075570_010 0.1851529485 - - -
11 Hb_179763_010 0.1953696974 - - -
12 Hb_064951_010 0.2008061047 - - PREDICTED: uncharacterized protein LOC103699089, partial [Phoenix dactylifera]
13 Hb_001584_230 0.2079638505 - - invertase/pectin methylesterase inhibitor family protein [Populus trichocarpa]
14 Hb_000007_310 0.21460459 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
15 Hb_003494_260 0.2273385946 - - -
16 Hb_132629_010 0.2273748347 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
17 Hb_000345_480 0.2354925614 - - cyclin-dependent protein kinase, putative [Ricinus communis]
18 Hb_007218_090 0.2362992292 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
19 Hb_000123_390 0.2378215543 - - conserved hypothetical protein [Ricinus communis]
20 Hb_076583_010 0.2408663036 - - hypothetical protein JCGZ_17827 [Jatropha curcas]

Gene co-expression network

sample Hb_067345_050 Hb_067345_050 Hb_066784_020 Hb_066784_020 Hb_067345_050--Hb_066784_020 Hb_001135_270 Hb_001135_270 Hb_067345_050--Hb_001135_270 Hb_003529_210 Hb_003529_210 Hb_067345_050--Hb_003529_210 Hb_081636_010 Hb_081636_010 Hb_067345_050--Hb_081636_010 Hb_005799_030 Hb_005799_030 Hb_067345_050--Hb_005799_030 Hb_182310_010 Hb_182310_010 Hb_067345_050--Hb_182310_010 Hb_066784_020--Hb_003529_210 Hb_064951_010 Hb_064951_010 Hb_066784_020--Hb_064951_010 Hb_076583_010 Hb_076583_010 Hb_066784_020--Hb_076583_010 Hb_001899_010 Hb_001899_010 Hb_066784_020--Hb_001899_010 Hb_066784_020--Hb_001135_270 Hb_001135_270--Hb_005799_030 Hb_001135_270--Hb_081636_010 Hb_001584_230 Hb_001584_230 Hb_001135_270--Hb_001584_230 Hb_000123_390 Hb_000123_390 Hb_001135_270--Hb_000123_390 Hb_001135_270--Hb_001899_010 Hb_003529_210--Hb_064951_010 Hb_003529_210--Hb_001899_010 Hb_003529_210--Hb_076583_010 Hb_179763_010 Hb_179763_010 Hb_003529_210--Hb_179763_010 Hb_081636_010--Hb_005799_030 Hb_081636_010--Hb_001584_230 Hb_013983_010 Hb_013983_010 Hb_081636_010--Hb_013983_010 Hb_029866_010 Hb_029866_010 Hb_081636_010--Hb_029866_010 Hb_005799_030--Hb_001584_230 Hb_005799_030--Hb_000123_390 Hb_005799_030--Hb_001899_010 Hb_005799_030--Hb_179763_010 Hb_000563_280 Hb_000563_280 Hb_182310_010--Hb_000563_280 Hb_105484_010 Hb_105484_010 Hb_182310_010--Hb_105484_010 Hb_075570_010 Hb_075570_010 Hb_182310_010--Hb_075570_010 Hb_001241_040 Hb_001241_040 Hb_182310_010--Hb_001241_040 Hb_001604_110 Hb_001604_110 Hb_182310_010--Hb_001604_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0894994 0 0 0 0.181375 0.245361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis