Hb_075570_010

Information

Type -
Description -
Location Contig75570: 6527-13808
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_075570_010 0.0 - - -
2 Hb_132629_010 0.043103928 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
3 Hb_000007_310 0.0630128448 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
4 Hb_003494_260 0.0831271382 - - -
5 Hb_177627_010 0.0862545268 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_000153_040 0.1180620463 - - -
7 Hb_000345_480 0.1193805705 - - cyclin-dependent protein kinase, putative [Ricinus communis]
8 Hb_000153_020 0.1316042849 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001892_160 0.1489461984 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
10 Hb_001604_110 0.1549183966 - - -
11 Hb_005539_320 0.1752377898 - - PREDICTED: pumilio homolog 15-like [Vitis vinifera]
12 Hb_156144_020 0.1764278297 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
13 Hb_182310_010 0.1851497626 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
14 Hb_067345_050 0.1851529485 - - PREDICTED: uncharacterized protein LOC104107076 [Nicotiana tomentosiformis]
15 Hb_013983_010 0.1860368495 - - hypothetical protein PRUPE_ppa016763mg, partial [Prunus persica]
16 Hb_001741_100 0.1888146351 rubber biosynthesis Gene Name: REF6 unnamed protein product [Vitis vinifera]
17 Hb_081636_010 0.1982085282 - - -
18 Hb_171554_020 0.2018384442 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
19 Hb_002217_130 0.2100668224 - - galactinol synthase-1 [Manihot esculenta]
20 Hb_000094_390 0.212547085 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Nelumbo nucifera]

Gene co-expression network

sample Hb_075570_010 Hb_075570_010 Hb_132629_010 Hb_132629_010 Hb_075570_010--Hb_132629_010 Hb_000007_310 Hb_000007_310 Hb_075570_010--Hb_000007_310 Hb_003494_260 Hb_003494_260 Hb_075570_010--Hb_003494_260 Hb_177627_010 Hb_177627_010 Hb_075570_010--Hb_177627_010 Hb_000153_040 Hb_000153_040 Hb_075570_010--Hb_000153_040 Hb_000345_480 Hb_000345_480 Hb_075570_010--Hb_000345_480 Hb_132629_010--Hb_000007_310 Hb_132629_010--Hb_177627_010 Hb_132629_010--Hb_003494_260 Hb_000153_020 Hb_000153_020 Hb_132629_010--Hb_000153_020 Hb_132629_010--Hb_000153_040 Hb_000007_310--Hb_177627_010 Hb_000007_310--Hb_003494_260 Hb_000007_310--Hb_000153_020 Hb_000007_310--Hb_000153_040 Hb_003494_260--Hb_000345_480 Hb_003494_260--Hb_000153_040 Hb_013983_010 Hb_013983_010 Hb_003494_260--Hb_013983_010 Hb_001604_110 Hb_001604_110 Hb_177627_010--Hb_001604_110 Hb_005539_320 Hb_005539_320 Hb_177627_010--Hb_005539_320 Hb_177627_010--Hb_000153_020 Hb_000153_040--Hb_000345_480 Hb_000153_040--Hb_013983_010 Hb_000345_480--Hb_013983_010 Hb_000345_480--Hb_132629_010 Hb_029866_010 Hb_029866_010 Hb_000345_480--Hb_029866_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.055389 0 0 0 0.0520928 0.0496753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis