Hb_000153_020

Information

Type -
Description -
Location Contig153: 30621-31753
Sequence    

Annotation

kegg
ID rcu:RCOM_0072660
description hypothetical protein
nr
ID XP_002534512.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SFC7
description F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1
trembl
ID B9T8E3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0072660 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein at3g07870-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000153_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_177627_010 0.0933864378 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_132629_010 0.0970519201 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
4 Hb_000007_310 0.1140515139 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
5 Hb_005539_320 0.1178742368 - - PREDICTED: pumilio homolog 15-like [Vitis vinifera]
6 Hb_001178_120 0.123416622 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
7 Hb_075570_010 0.1316042849 - - -
8 Hb_001604_110 0.1347106554 - - -
9 Hb_000094_390 0.1372816183 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Nelumbo nucifera]
10 Hb_000153_040 0.1392713988 - - -
11 Hb_001892_160 0.1425821958 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
12 Hb_003494_260 0.1467136441 - - -
13 Hb_000345_480 0.1810720971 - - cyclin-dependent protein kinase, putative [Ricinus communis]
14 Hb_158990_010 0.1852786295 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
15 Hb_156144_020 0.2091932815 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
16 Hb_171554_020 0.210868017 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
17 Hb_002217_130 0.2121750407 - - galactinol synthase-1 [Manihot esculenta]
18 Hb_001741_100 0.2154046189 rubber biosynthesis Gene Name: REF6 unnamed protein product [Vitis vinifera]
19 Hb_027998_030 0.2211058793 - - laccase, putative [Ricinus communis]
20 Hb_007634_020 0.223157857 - - -

Gene co-expression network

sample Hb_000153_020 Hb_000153_020 Hb_177627_010 Hb_177627_010 Hb_000153_020--Hb_177627_010 Hb_132629_010 Hb_132629_010 Hb_000153_020--Hb_132629_010 Hb_000007_310 Hb_000007_310 Hb_000153_020--Hb_000007_310 Hb_005539_320 Hb_005539_320 Hb_000153_020--Hb_005539_320 Hb_001178_120 Hb_001178_120 Hb_000153_020--Hb_001178_120 Hb_075570_010 Hb_075570_010 Hb_000153_020--Hb_075570_010 Hb_177627_010--Hb_132629_010 Hb_001604_110 Hb_001604_110 Hb_177627_010--Hb_001604_110 Hb_177627_010--Hb_000007_310 Hb_177627_010--Hb_075570_010 Hb_177627_010--Hb_005539_320 Hb_132629_010--Hb_075570_010 Hb_132629_010--Hb_000007_310 Hb_003494_260 Hb_003494_260 Hb_132629_010--Hb_003494_260 Hb_000153_040 Hb_000153_040 Hb_132629_010--Hb_000153_040 Hb_000007_310--Hb_075570_010 Hb_000007_310--Hb_003494_260 Hb_000007_310--Hb_000153_040 Hb_005539_320--Hb_001604_110 Hb_005539_320--Hb_001178_120 Hb_005539_320--Hb_132629_010 Hb_005539_320--Hb_000007_310 Hb_158990_010 Hb_158990_010 Hb_001178_120--Hb_158990_010 Hb_000094_390 Hb_000094_390 Hb_001178_120--Hb_000094_390 Hb_001178_120--Hb_177627_010 Hb_001178_120--Hb_132629_010 Hb_075570_010--Hb_003494_260 Hb_075570_010--Hb_000153_040 Hb_000345_480 Hb_000345_480 Hb_075570_010--Hb_000345_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
59.2058 0.897088 0 0.0149805 33.9525 28.9749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0444241 0.0349427 0 0 0

CAGE analysis