Hb_003494_260

Information

Type -
Description -
Location Contig3494: 239867-240481
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003494_260 0.0 - - -
2 Hb_000345_480 0.0410271007 - - cyclin-dependent protein kinase, putative [Ricinus communis]
3 Hb_000153_040 0.0465828556 - - -
4 Hb_132629_010 0.0811995001 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
5 Hb_075570_010 0.0831271382 - - -
6 Hb_000007_310 0.1116558272 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
7 Hb_013983_010 0.1161870997 - - hypothetical protein PRUPE_ppa016763mg, partial [Prunus persica]
8 Hb_177627_010 0.1451658991 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_000153_020 0.1467136441 - - conserved hypothetical protein [Ricinus communis]
10 Hb_156144_020 0.1620445913 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
11 Hb_029866_010 0.1725878549 - - -
12 Hb_001892_160 0.1743940337 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
13 Hb_081636_010 0.1827013258 - - -
14 Hb_001125_030 0.1899759301 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001741_100 0.203497323 rubber biosynthesis Gene Name: REF6 unnamed protein product [Vitis vinifera]
16 Hb_000094_390 0.2065335378 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Nelumbo nucifera]
17 Hb_001178_120 0.2147009682 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
18 Hb_001604_110 0.2182073348 - - -
19 Hb_005539_320 0.2218605486 - - PREDICTED: pumilio homolog 15-like [Vitis vinifera]
20 Hb_002217_130 0.2226507957 - - galactinol synthase-1 [Manihot esculenta]

Gene co-expression network

sample Hb_003494_260 Hb_003494_260 Hb_000345_480 Hb_000345_480 Hb_003494_260--Hb_000345_480 Hb_000153_040 Hb_000153_040 Hb_003494_260--Hb_000153_040 Hb_132629_010 Hb_132629_010 Hb_003494_260--Hb_132629_010 Hb_075570_010 Hb_075570_010 Hb_003494_260--Hb_075570_010 Hb_000007_310 Hb_000007_310 Hb_003494_260--Hb_000007_310 Hb_013983_010 Hb_013983_010 Hb_003494_260--Hb_013983_010 Hb_000345_480--Hb_000153_040 Hb_000345_480--Hb_013983_010 Hb_000345_480--Hb_075570_010 Hb_000345_480--Hb_132629_010 Hb_029866_010 Hb_029866_010 Hb_000345_480--Hb_029866_010 Hb_000153_040--Hb_132629_010 Hb_000153_040--Hb_075570_010 Hb_000153_040--Hb_013983_010 Hb_000153_040--Hb_000007_310 Hb_132629_010--Hb_075570_010 Hb_132629_010--Hb_000007_310 Hb_177627_010 Hb_177627_010 Hb_132629_010--Hb_177627_010 Hb_000153_020 Hb_000153_020 Hb_132629_010--Hb_000153_020 Hb_075570_010--Hb_000007_310 Hb_075570_010--Hb_177627_010 Hb_000007_310--Hb_177627_010 Hb_000007_310--Hb_000153_020 Hb_013983_010--Hb_029866_010 Hb_001125_030 Hb_001125_030 Hb_013983_010--Hb_001125_030 Hb_081636_010 Hb_081636_010 Hb_013983_010--Hb_081636_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.138163 0 0 0 0.163468 0.0952863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis