Hb_000345_480

Information

Type -
Description -
Location Contig345: 382369-384501
Sequence    

Annotation

kegg
ID rcu:RCOM_1431440
description cyclin-dependent protein kinase, putative
nr
ID XP_002512374.1
description cyclin-dependent protein kinase, putative [Ricinus communis]
swissprot
ID Q75HV0
description Cyclin-P3-1 OS=Oryza sativa subsp. japonica GN=CYCP3-1 PE=3 SV=1
trembl
ID B9RF55
description Cyclin-dependent protein kinase, putative OS=Ricinus communis GN=RCOM_1431440 PE=4 SV=1
Gene Ontology
ID GO:0016301
description cyclin-p3-1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_480 0.0 - - cyclin-dependent protein kinase, putative [Ricinus communis]
2 Hb_003494_260 0.0410271007 - - -
3 Hb_000153_040 0.0587714436 - - -
4 Hb_013983_010 0.0759500523 - - hypothetical protein PRUPE_ppa016763mg, partial [Prunus persica]
5 Hb_075570_010 0.1193805705 - - -
6 Hb_132629_010 0.1220359713 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
7 Hb_029866_010 0.1328023087 - - -
8 Hb_000007_310 0.1471408546 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
9 Hb_001125_030 0.1517648602 - - conserved hypothetical protein [Ricinus communis]
10 Hb_081636_010 0.1649834984 - - -
11 Hb_156144_020 0.1659827602 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
12 Hb_000153_020 0.1810720971 - - conserved hypothetical protein [Ricinus communis]
13 Hb_177627_010 0.1857390774 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_001892_160 0.2009934064 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
15 Hb_001135_270 0.212009509 - - -
16 Hb_059126_010 0.2162756701 - - -
17 Hb_001741_100 0.2171971107 rubber biosynthesis Gene Name: REF6 unnamed protein product [Vitis vinifera]
18 Hb_134732_010 0.2175233739 - - -
19 Hb_005799_030 0.2229386706 - - PREDICTED: uncharacterized protein LOC103926623 [Pyrus x bretschneideri]
20 Hb_114868_010 0.2258394489 - - -

Gene co-expression network

sample Hb_000345_480 Hb_000345_480 Hb_003494_260 Hb_003494_260 Hb_000345_480--Hb_003494_260 Hb_000153_040 Hb_000153_040 Hb_000345_480--Hb_000153_040 Hb_013983_010 Hb_013983_010 Hb_000345_480--Hb_013983_010 Hb_075570_010 Hb_075570_010 Hb_000345_480--Hb_075570_010 Hb_132629_010 Hb_132629_010 Hb_000345_480--Hb_132629_010 Hb_029866_010 Hb_029866_010 Hb_000345_480--Hb_029866_010 Hb_003494_260--Hb_000153_040 Hb_003494_260--Hb_132629_010 Hb_003494_260--Hb_075570_010 Hb_000007_310 Hb_000007_310 Hb_003494_260--Hb_000007_310 Hb_003494_260--Hb_013983_010 Hb_000153_040--Hb_132629_010 Hb_000153_040--Hb_075570_010 Hb_000153_040--Hb_013983_010 Hb_000153_040--Hb_000007_310 Hb_013983_010--Hb_029866_010 Hb_001125_030 Hb_001125_030 Hb_013983_010--Hb_001125_030 Hb_081636_010 Hb_081636_010 Hb_013983_010--Hb_081636_010 Hb_075570_010--Hb_132629_010 Hb_075570_010--Hb_000007_310 Hb_177627_010 Hb_177627_010 Hb_075570_010--Hb_177627_010 Hb_132629_010--Hb_000007_310 Hb_132629_010--Hb_177627_010 Hb_000153_020 Hb_000153_020 Hb_132629_010--Hb_000153_020 Hb_029866_010--Hb_001125_030 Hb_033225_020 Hb_033225_020 Hb_029866_010--Hb_033225_020 Hb_059126_010 Hb_059126_010 Hb_029866_010--Hb_059126_010 Hb_029866_010--Hb_081636_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.210469 0 0 0 0.302866 0.145444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis