Hb_013983_010

Information

Type -
Description -
Location Contig13983: 1045-3938
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa016763mg
description hypothetical protein
nr
ID XP_007221083.1
description hypothetical protein PRUPE_ppa016763mg, partial [Prunus persica]
swissprot
ID P31843
description RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1
trembl
ID M5X890
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016763mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013983_010 0.0 - - hypothetical protein PRUPE_ppa016763mg, partial [Prunus persica]
2 Hb_029866_010 0.0571134842 - - -
3 Hb_000345_480 0.0759500523 - - cyclin-dependent protein kinase, putative [Ricinus communis]
4 Hb_001125_030 0.0995986433 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003494_260 0.1161870997 - - -
6 Hb_000153_040 0.1267932164 - - -
7 Hb_081636_010 0.139496145 - - -
8 Hb_059126_010 0.1521835393 - - -
9 Hb_033225_020 0.1533308212 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001584_230 0.1769615677 - - invertase/pectin methylesterase inhibitor family protein [Populus trichocarpa]
11 Hb_075570_010 0.1860368495 - - -
12 Hb_001135_270 0.1863626468 - - -
13 Hb_114868_010 0.1889507752 - - -
14 Hb_005799_030 0.1922533884 - - PREDICTED: uncharacterized protein LOC103926623 [Pyrus x bretschneideri]
15 Hb_156144_020 0.1937388449 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
16 Hb_132629_010 0.1957902829 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
17 Hb_134732_010 0.2084620243 - - -
18 Hb_002983_100 0.2092325989 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF084 [Jatropha curcas]
19 Hb_005116_020 0.2100625458 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Sesamum indicum]
20 Hb_000007_310 0.2140625148 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]

Gene co-expression network

sample Hb_013983_010 Hb_013983_010 Hb_029866_010 Hb_029866_010 Hb_013983_010--Hb_029866_010 Hb_000345_480 Hb_000345_480 Hb_013983_010--Hb_000345_480 Hb_001125_030 Hb_001125_030 Hb_013983_010--Hb_001125_030 Hb_003494_260 Hb_003494_260 Hb_013983_010--Hb_003494_260 Hb_000153_040 Hb_000153_040 Hb_013983_010--Hb_000153_040 Hb_081636_010 Hb_081636_010 Hb_013983_010--Hb_081636_010 Hb_029866_010--Hb_001125_030 Hb_033225_020 Hb_033225_020 Hb_029866_010--Hb_033225_020 Hb_059126_010 Hb_059126_010 Hb_029866_010--Hb_059126_010 Hb_029866_010--Hb_000345_480 Hb_029866_010--Hb_081636_010 Hb_000345_480--Hb_003494_260 Hb_000345_480--Hb_000153_040 Hb_075570_010 Hb_075570_010 Hb_000345_480--Hb_075570_010 Hb_132629_010 Hb_132629_010 Hb_000345_480--Hb_132629_010 Hb_001125_030--Hb_059126_010 Hb_001125_030--Hb_033225_020 Hb_001125_030--Hb_000345_480 Hb_001125_030--Hb_000153_040 Hb_003494_260--Hb_000153_040 Hb_003494_260--Hb_132629_010 Hb_003494_260--Hb_075570_010 Hb_000007_310 Hb_000007_310 Hb_003494_260--Hb_000007_310 Hb_000153_040--Hb_132629_010 Hb_000153_040--Hb_075570_010 Hb_000153_040--Hb_000007_310 Hb_001135_270 Hb_001135_270 Hb_081636_010--Hb_001135_270 Hb_005799_030 Hb_005799_030 Hb_081636_010--Hb_005799_030 Hb_001584_230 Hb_001584_230 Hb_081636_010--Hb_001584_230 Hb_067345_050 Hb_067345_050 Hb_081636_010--Hb_067345_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0253436 0 0 0 0.0544137 0.0198061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis