Hb_033225_020

Information

Type -
Description -
Location Contig33225: 6624-8145
Sequence    

Annotation

kegg
ID rcu:RCOM_0707320
description hypothetical protein
nr
ID XP_002516138.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQW9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0707320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033225_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_059126_010 0.0759775182 - - -
3 Hb_029866_010 0.0984245315 - - -
4 Hb_001125_030 0.1192085116 - - conserved hypothetical protein [Ricinus communis]
5 Hb_013983_010 0.1533308212 - - hypothetical protein PRUPE_ppa016763mg, partial [Prunus persica]
6 Hb_001584_230 0.1772343728 - - invertase/pectin methylesterase inhibitor family protein [Populus trichocarpa]
7 Hb_002983_100 0.1788086854 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF084 [Jatropha curcas]
8 Hb_002232_200 0.1859895974 - - PREDICTED: sugar carrier protein C-like [Jatropha curcas]
9 Hb_007127_010 0.2021944148 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
10 Hb_005116_020 0.2026841212 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Sesamum indicum]
11 Hb_114868_010 0.2081759982 - - -
12 Hb_081636_010 0.2116809448 - - -
13 Hb_000123_390 0.2195053359 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000008_050 0.2222328767 - - Phenylalanine ammonia-lyase, putative [Ricinus communis]
15 Hb_000345_480 0.227587986 - - cyclin-dependent protein kinase, putative [Ricinus communis]
16 Hb_005799_030 0.2315820882 - - PREDICTED: uncharacterized protein LOC103926623 [Pyrus x bretschneideri]
17 Hb_001135_270 0.237662494 - - -
18 Hb_002900_060 0.2533031132 - - CI small heat shock protein 2 [Prunus salicina]
19 Hb_000005_040 0.2544953808 - - PREDICTED: histone H2B.2 [Jatropha curcas]
20 Hb_000362_240 0.2557947365 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_033225_020 Hb_033225_020 Hb_059126_010 Hb_059126_010 Hb_033225_020--Hb_059126_010 Hb_029866_010 Hb_029866_010 Hb_033225_020--Hb_029866_010 Hb_001125_030 Hb_001125_030 Hb_033225_020--Hb_001125_030 Hb_013983_010 Hb_013983_010 Hb_033225_020--Hb_013983_010 Hb_001584_230 Hb_001584_230 Hb_033225_020--Hb_001584_230 Hb_002983_100 Hb_002983_100 Hb_033225_020--Hb_002983_100 Hb_059126_010--Hb_001125_030 Hb_059126_010--Hb_029866_010 Hb_059126_010--Hb_013983_010 Hb_000008_050 Hb_000008_050 Hb_059126_010--Hb_000008_050 Hb_059126_010--Hb_002983_100 Hb_029866_010--Hb_013983_010 Hb_029866_010--Hb_001125_030 Hb_000345_480 Hb_000345_480 Hb_029866_010--Hb_000345_480 Hb_081636_010 Hb_081636_010 Hb_029866_010--Hb_081636_010 Hb_001125_030--Hb_013983_010 Hb_001125_030--Hb_000345_480 Hb_000153_040 Hb_000153_040 Hb_001125_030--Hb_000153_040 Hb_013983_010--Hb_000345_480 Hb_003494_260 Hb_003494_260 Hb_013983_010--Hb_003494_260 Hb_013983_010--Hb_000153_040 Hb_013983_010--Hb_081636_010 Hb_005799_030 Hb_005799_030 Hb_001584_230--Hb_005799_030 Hb_001135_270 Hb_001135_270 Hb_001584_230--Hb_001135_270 Hb_001584_230--Hb_081636_010 Hb_000123_390 Hb_000123_390 Hb_001584_230--Hb_000123_390 Hb_001584_230--Hb_029866_010 Hb_001899_010 Hb_001899_010 Hb_001584_230--Hb_001899_010 Hb_005116_020 Hb_005116_020 Hb_002983_100--Hb_005116_020 Hb_003320_030 Hb_003320_030 Hb_002983_100--Hb_003320_030 Hb_141838_010 Hb_141838_010 Hb_002983_100--Hb_141838_010 Hb_002983_100--Hb_001125_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0276641 0 0 0 0.133384 0.0244409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis