Hb_000008_050

Information

Type -
Description -
Location Contig8: 29147-33299
Sequence    

Annotation

kegg
ID rcu:RCOM_0543910
description Phenylalanine ammonia-lyase, putative (EC:4.3.1.24)
nr
ID XP_002529414.1
description Phenylalanine ammonia-lyase, putative [Ricinus communis]
swissprot
ID P45726
description Phenylalanine ammonia-lyase OS=Camellia sinensis GN=PAL PE=2 SV=1
trembl
ID B9STU5
description Phenylalanine ammonia-lyase, putative OS=Ricinus communis GN=RCOM_0543910 PE=3 SV=1
Gene Ontology
ID GO:0005737
description phenylalanine ammonia-lyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_050 0.0 - - Phenylalanine ammonia-lyase, putative [Ricinus communis]
2 Hb_001364_020 0.1502803415 - - -
3 Hb_000362_240 0.1516309757 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005867_010 0.1545643726 - - -
5 Hb_059126_010 0.1650594159 - - -
6 Hb_000038_160 0.176936901 - - putative gag protein [Coffea canephora]
7 Hb_140049_070 0.1776208801 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002805_320 0.1802689158 - - -
9 Hb_002163_060 0.1887046314 - - -
10 Hb_001125_030 0.1924163796 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007127_010 0.2038803061 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
12 Hb_033225_020 0.2222328767 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002983_100 0.2232574921 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF084 [Jatropha curcas]
14 Hb_000281_210 0.2324866747 - - -
15 Hb_000739_090 0.2446918466 - - -
16 Hb_022693_150 0.2462948525 - - -
17 Hb_152587_010 0.2480013238 - - -
18 Hb_027393_020 0.2499560953 - - -
19 Hb_000479_120 0.2533515116 transcription factor TF Family: FAR1 FAR1-related sequence 5 [Theobroma cacao]
20 Hb_029866_010 0.2579036177 - - -

Gene co-expression network

sample Hb_000008_050 Hb_000008_050 Hb_001364_020 Hb_001364_020 Hb_000008_050--Hb_001364_020 Hb_000362_240 Hb_000362_240 Hb_000008_050--Hb_000362_240 Hb_005867_010 Hb_005867_010 Hb_000008_050--Hb_005867_010 Hb_059126_010 Hb_059126_010 Hb_000008_050--Hb_059126_010 Hb_000038_160 Hb_000038_160 Hb_000008_050--Hb_000038_160 Hb_140049_070 Hb_140049_070 Hb_000008_050--Hb_140049_070 Hb_001364_020--Hb_005867_010 Hb_001364_020--Hb_000038_160 Hb_001364_020--Hb_140049_070 Hb_002805_320 Hb_002805_320 Hb_001364_020--Hb_002805_320 Hb_002163_060 Hb_002163_060 Hb_001364_020--Hb_002163_060 Hb_027393_020 Hb_027393_020 Hb_001364_020--Hb_027393_020 Hb_022693_150 Hb_022693_150 Hb_000362_240--Hb_022693_150 Hb_000479_120 Hb_000479_120 Hb_000362_240--Hb_000479_120 Hb_000362_240--Hb_059126_010 Hb_001125_030 Hb_001125_030 Hb_000362_240--Hb_001125_030 Hb_000362_240--Hb_001364_020 Hb_005867_010--Hb_000038_160 Hb_005867_010--Hb_140049_070 Hb_005867_010--Hb_002805_320 Hb_005867_010--Hb_002163_060 Hb_005867_010--Hb_027393_020 Hb_059126_010--Hb_001125_030 Hb_033225_020 Hb_033225_020 Hb_059126_010--Hb_033225_020 Hb_029866_010 Hb_029866_010 Hb_059126_010--Hb_029866_010 Hb_013983_010 Hb_013983_010 Hb_059126_010--Hb_013983_010 Hb_002983_100 Hb_002983_100 Hb_059126_010--Hb_002983_100 Hb_000038_160--Hb_140049_070 Hb_000038_160--Hb_002805_320 Hb_000038_160--Hb_002163_060 Hb_000038_160--Hb_027393_020 Hb_140049_070--Hb_002805_320 Hb_140049_070--Hb_002163_060 Hb_140049_070--Hb_027393_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.723343 0.0227556 0 0 2.11476 0.0585024
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0208884 0 0 0 0

CAGE analysis