Hb_000479_120

Information

Type transcription factor
Description TF Family: FAR1
Location Contig479: 71150-73298
Sequence    

Annotation

kegg
ID tcc:TCM_018711
description FAR1-related sequence 5
nr
ID XP_007032686.1
description FAR1-related sequence 5 [Theobroma cacao]
swissprot
ID Q9SZL8
description Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1
trembl
ID A0A061EGU0
description FAR1-related sequence 5 OS=Theobroma cacao GN=TCM_018711 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein far1-related sequence 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000479_120 0.0 transcription factor TF Family: FAR1 FAR1-related sequence 5 [Theobroma cacao]
2 Hb_000362_240 0.1991201392 - - conserved hypothetical protein [Ricinus communis]
3 Hb_022693_150 0.2447699247 - - -
4 Hb_004650_080 0.2448180543 - - -
5 Hb_002983_100 0.24815137 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF084 [Jatropha curcas]
6 Hb_000008_050 0.2533515116 - - Phenylalanine ammonia-lyase, putative [Ricinus communis]
7 Hb_168978_040 0.2569598402 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
8 Hb_043655_010 0.2621634625 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
9 Hb_007127_010 0.2627244619 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
10 Hb_141838_010 0.2630340767 - - -
11 Hb_007382_020 0.2637694551 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
12 Hb_059126_010 0.283152251 - - -
13 Hb_025194_030 0.2866445356 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
14 Hb_004846_180 0.2950835467 - - heat shock protein, putative [Ricinus communis]
15 Hb_001125_030 0.2955869007 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000853_300 0.3028789665 - - -
17 Hb_007547_030 0.3047739164 - - vacuolar sorting receptor family protein [Populus trichocarpa]
18 Hb_002232_290 0.3064665534 - - -
19 Hb_033225_020 0.3094462276 - - conserved hypothetical protein [Ricinus communis]
20 Hb_171108_010 0.3119089335 - - -

Gene co-expression network

sample Hb_000479_120 Hb_000479_120 Hb_000362_240 Hb_000362_240 Hb_000479_120--Hb_000362_240 Hb_022693_150 Hb_022693_150 Hb_000479_120--Hb_022693_150 Hb_004650_080 Hb_004650_080 Hb_000479_120--Hb_004650_080 Hb_002983_100 Hb_002983_100 Hb_000479_120--Hb_002983_100 Hb_000008_050 Hb_000008_050 Hb_000479_120--Hb_000008_050 Hb_168978_040 Hb_168978_040 Hb_000479_120--Hb_168978_040 Hb_000362_240--Hb_000008_050 Hb_000362_240--Hb_022693_150 Hb_059126_010 Hb_059126_010 Hb_000362_240--Hb_059126_010 Hb_001125_030 Hb_001125_030 Hb_000362_240--Hb_001125_030 Hb_001364_020 Hb_001364_020 Hb_000362_240--Hb_001364_020 Hb_084426_010 Hb_084426_010 Hb_022693_150--Hb_084426_010 Hb_022693_150--Hb_000008_050 Hb_022693_150--Hb_001364_020 Hb_000922_310 Hb_000922_310 Hb_022693_150--Hb_000922_310 Hb_001329_260 Hb_001329_260 Hb_004650_080--Hb_001329_260 Hb_004097_020 Hb_004097_020 Hb_004650_080--Hb_004097_020 Hb_003768_040 Hb_003768_040 Hb_004650_080--Hb_003768_040 Hb_001946_360 Hb_001946_360 Hb_004650_080--Hb_001946_360 Hb_004650_080--Hb_168978_040 Hb_097433_010 Hb_097433_010 Hb_004650_080--Hb_097433_010 Hb_005116_020 Hb_005116_020 Hb_002983_100--Hb_005116_020 Hb_003320_030 Hb_003320_030 Hb_002983_100--Hb_003320_030 Hb_141838_010 Hb_141838_010 Hb_002983_100--Hb_141838_010 Hb_002983_100--Hb_059126_010 Hb_033225_020 Hb_033225_020 Hb_002983_100--Hb_033225_020 Hb_002983_100--Hb_001125_030 Hb_000008_050--Hb_001364_020 Hb_005867_010 Hb_005867_010 Hb_000008_050--Hb_005867_010 Hb_000008_050--Hb_059126_010 Hb_000038_160 Hb_000038_160 Hb_000008_050--Hb_000038_160 Hb_140049_070 Hb_140049_070 Hb_000008_050--Hb_140049_070 Hb_007382_020 Hb_007382_020 Hb_168978_040--Hb_007382_020 Hb_025194_030 Hb_025194_030 Hb_168978_040--Hb_025194_030 Hb_011515_030 Hb_011515_030 Hb_168978_040--Hb_011515_030 Hb_168978_040--Hb_002983_100 Hb_029508_010 Hb_029508_010 Hb_168978_040--Hb_029508_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0962216 0.03202 0 0 0.291632 0.0169762
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0329082 0 0

CAGE analysis