Hb_002983_100

Information

Type transcription factor
Description TF Family: ERF
Location Contig2983: 96043-96981
Sequence    

Annotation

kegg
ID pop:POPTR_0017s08090g
description POPTRDRAFT_668371; hypothetical protein
nr
ID XP_012073423.1
description PREDICTED: ethylene-responsive transcription factor ERF084 [Jatropha curcas]
swissprot
ID Q9M8M5
description Ethylene-responsive transcription factor ERF084 OS=Arabidopsis thaliana GN=ERF084 PE=2 SV=1
trembl
ID A0A067KL79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06067 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor erf084

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002983_100 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF084 [Jatropha curcas]
2 Hb_005116_020 0.1430421461 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Sesamum indicum]
3 Hb_003320_030 0.1508074095 - - conserved hypothetical protein [Ricinus communis]
4 Hb_141838_010 0.1648477996 - - -
5 Hb_059126_010 0.1744443227 - - -
6 Hb_033225_020 0.1788086854 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001125_030 0.1822695982 - - conserved hypothetical protein [Ricinus communis]
8 Hb_134732_010 0.1845453488 - - -
9 Hb_029866_010 0.1877105013 - - -
10 Hb_011515_030 0.1928387481 - - -
11 Hb_013983_010 0.2092325989 - - hypothetical protein PRUPE_ppa016763mg, partial [Prunus persica]
12 Hb_000008_050 0.2232574921 - - Phenylalanine ammonia-lyase, putative [Ricinus communis]
13 Hb_168978_040 0.223708999 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
14 Hb_010603_030 0.2298030818 - - -
15 Hb_114868_010 0.2313228242 - - -
16 Hb_000548_010 0.2349582905 - - -
17 Hb_000362_240 0.2353750801 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000115_170 0.2368648813 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
19 Hb_007382_020 0.2371520369 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
20 Hb_007127_010 0.2399134768 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]

Gene co-expression network

sample Hb_002983_100 Hb_002983_100 Hb_005116_020 Hb_005116_020 Hb_002983_100--Hb_005116_020 Hb_003320_030 Hb_003320_030 Hb_002983_100--Hb_003320_030 Hb_141838_010 Hb_141838_010 Hb_002983_100--Hb_141838_010 Hb_059126_010 Hb_059126_010 Hb_002983_100--Hb_059126_010 Hb_033225_020 Hb_033225_020 Hb_002983_100--Hb_033225_020 Hb_001125_030 Hb_001125_030 Hb_002983_100--Hb_001125_030 Hb_134732_010 Hb_134732_010 Hb_005116_020--Hb_134732_010 Hb_005116_020--Hb_003320_030 Hb_001159_210 Hb_001159_210 Hb_005116_020--Hb_001159_210 Hb_000038_150 Hb_000038_150 Hb_005116_020--Hb_000038_150 Hb_029866_010 Hb_029866_010 Hb_005116_020--Hb_029866_010 Hb_001329_260 Hb_001329_260 Hb_003320_030--Hb_001329_260 Hb_003320_030--Hb_001159_210 Hb_003320_030--Hb_000038_150 Hb_003320_030--Hb_134732_010 Hb_011515_030 Hb_011515_030 Hb_141838_010--Hb_011515_030 Hb_008147_030 Hb_008147_030 Hb_141838_010--Hb_008147_030 Hb_141838_010--Hb_003320_030 Hb_004092_010 Hb_004092_010 Hb_141838_010--Hb_004092_010 Hb_002903_120 Hb_002903_120 Hb_141838_010--Hb_002903_120 Hb_059126_010--Hb_001125_030 Hb_059126_010--Hb_033225_020 Hb_059126_010--Hb_029866_010 Hb_013983_010 Hb_013983_010 Hb_059126_010--Hb_013983_010 Hb_000008_050 Hb_000008_050 Hb_059126_010--Hb_000008_050 Hb_033225_020--Hb_029866_010 Hb_033225_020--Hb_001125_030 Hb_033225_020--Hb_013983_010 Hb_001584_230 Hb_001584_230 Hb_033225_020--Hb_001584_230 Hb_001125_030--Hb_029866_010 Hb_001125_030--Hb_013983_010 Hb_000345_480 Hb_000345_480 Hb_001125_030--Hb_000345_480 Hb_000153_040 Hb_000153_040 Hb_001125_030--Hb_000153_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.5658 1.70402 0.59062 0.546769 91.7687 16.1207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.987168 1.50958 1.97611 0.625419 0.175638

CAGE analysis