Hb_000038_150

Information

Type -
Description -
Location Contig38: 204026-205932
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa024398mg
description hypothetical protein
nr
ID XP_012087208.1
description PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
swissprot
ID Q9BV68
description E3 ubiquitin-protein ligase RNF126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
trembl
ID A0A067JNH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20588 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase cip8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000038_150 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
2 Hb_045502_010 0.1117750597 - - prefoldin subunit 1 [Jatropha curcas]
3 Hb_001159_210 0.1286464922 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
4 Hb_134732_010 0.1464664317 - - -
5 Hb_035360_010 0.152114459 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
6 Hb_000619_070 0.1560378212 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
7 Hb_004460_020 0.1590408707 - - chaperone protein DNAj, putative [Ricinus communis]
8 Hb_003673_020 0.1614219885 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
9 Hb_000544_120 0.1699898073 - - PREDICTED: thymidylate kinase [Jatropha curcas]
10 Hb_008406_130 0.1711476233 - - -
11 Hb_003320_030 0.1714526938 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000161_100 0.1746852972 - - Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao]
13 Hb_005116_020 0.1797970581 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Sesamum indicum]
14 Hb_031073_010 0.1824040602 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
15 Hb_000175_530 0.1834418341 - - PREDICTED: uncharacterized protein LOC105136409 [Populus euphratica]
16 Hb_000211_080 0.1839262958 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
17 Hb_000454_030 0.18591872 - - -
18 Hb_003243_020 0.186485303 - - PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
19 Hb_001146_070 0.1871902184 transcription factor TF Family: bHLH LMYC2 [Hevea brasiliensis]
20 Hb_003226_170 0.1877931364 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000038_150 Hb_000038_150 Hb_045502_010 Hb_045502_010 Hb_000038_150--Hb_045502_010 Hb_001159_210 Hb_001159_210 Hb_000038_150--Hb_001159_210 Hb_134732_010 Hb_134732_010 Hb_000038_150--Hb_134732_010 Hb_035360_010 Hb_035360_010 Hb_000038_150--Hb_035360_010 Hb_000619_070 Hb_000619_070 Hb_000038_150--Hb_000619_070 Hb_004460_020 Hb_004460_020 Hb_000038_150--Hb_004460_020 Hb_045502_010--Hb_000619_070 Hb_045502_010--Hb_035360_010 Hb_003581_110 Hb_003581_110 Hb_045502_010--Hb_003581_110 Hb_003673_020 Hb_003673_020 Hb_045502_010--Hb_003673_020 Hb_000392_280 Hb_000392_280 Hb_045502_010--Hb_000392_280 Hb_002326_060 Hb_002326_060 Hb_001159_210--Hb_002326_060 Hb_001159_210--Hb_134732_010 Hb_047661_010 Hb_047661_010 Hb_001159_210--Hb_047661_010 Hb_001159_210--Hb_004460_020 Hb_003320_030 Hb_003320_030 Hb_001159_210--Hb_003320_030 Hb_005116_020 Hb_005116_020 Hb_134732_010--Hb_005116_020 Hb_134732_010--Hb_003320_030 Hb_156144_020 Hb_156144_020 Hb_134732_010--Hb_156144_020 Hb_000200_060 Hb_000200_060 Hb_134732_010--Hb_000200_060 Hb_035360_010--Hb_000619_070 Hb_035360_010--Hb_003673_020 Hb_000792_110 Hb_000792_110 Hb_035360_010--Hb_000792_110 Hb_000779_040 Hb_000779_040 Hb_035360_010--Hb_000779_040 Hb_000608_340 Hb_000608_340 Hb_035360_010--Hb_000608_340 Hb_000211_090 Hb_000211_090 Hb_035360_010--Hb_000211_090 Hb_000619_070--Hb_000608_340 Hb_000619_070--Hb_000779_040 Hb_000619_070--Hb_003673_020 Hb_019871_020 Hb_019871_020 Hb_000619_070--Hb_019871_020 Hb_001767_020 Hb_001767_020 Hb_004460_020--Hb_001767_020 Hb_004102_130 Hb_004102_130 Hb_004460_020--Hb_004102_130 Hb_008147_030 Hb_008147_030 Hb_004460_020--Hb_008147_030 Hb_001268_230 Hb_001268_230 Hb_004460_020--Hb_001268_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.12566 0.823239 0.822807 0.948256 18.1889 11.5611
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.955175 1.28637 0.362452 0.847516 0.19995

CAGE analysis