Hb_156144_020

Information

Type -
Description -
Location Contig156144: 37700-38606
Sequence    

Annotation

kegg
ID vvi:100854522
description uncharacterized protein At5g65660
nr
ID XP_003632481.1
description PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
swissprot
ID Q9LSK9
description Uncharacterized protein At5g65660 OS=Arabidopsis thaliana GN=At5g65660 PE=2 SV=1
trembl
ID D7SSI8
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0205g00010 PE=4 SV=1
Gene Ontology
ID GO:0005886
description hydroxyproline-rich glycoprotein family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13561: 37770-38447
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_156144_020 0.0 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
2 Hb_001892_160 0.1250399335 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
3 Hb_000175_530 0.1583033967 - - PREDICTED: uncharacterized protein LOC105136409 [Populus euphratica]
4 Hb_000580_060 0.1587521284 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
5 Hb_003494_260 0.1620445913 - - -
6 Hb_001017_100 0.1623762915 - - PREDICTED: uncharacterized protein LOC105644705 [Jatropha curcas]
7 Hb_007634_020 0.1651935988 - - -
8 Hb_000345_480 0.1659827602 - - cyclin-dependent protein kinase, putative [Ricinus communis]
9 Hb_001146_070 0.1673229003 transcription factor TF Family: bHLH LMYC2 [Hevea brasiliensis]
10 Hb_000153_040 0.1755367612 - - -
11 Hb_075570_010 0.1764278297 - - -
12 Hb_134732_010 0.1770739251 - - -
13 Hb_001741_100 0.1782009826 rubber biosynthesis Gene Name: REF6 unnamed protein product [Vitis vinifera]
14 Hb_132629_010 0.1820372399 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
15 Hb_000007_310 0.1821977906 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
16 Hb_005568_070 0.1844672961 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
17 Hb_000161_100 0.1856090058 - - Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao]
18 Hb_000548_010 0.1857897017 - - -
19 Hb_027998_030 0.1908510475 - - laccase, putative [Ricinus communis]
20 Hb_013983_010 0.1937388449 - - hypothetical protein PRUPE_ppa016763mg, partial [Prunus persica]

Gene co-expression network

sample Hb_156144_020 Hb_156144_020 Hb_001892_160 Hb_001892_160 Hb_156144_020--Hb_001892_160 Hb_000175_530 Hb_000175_530 Hb_156144_020--Hb_000175_530 Hb_000580_060 Hb_000580_060 Hb_156144_020--Hb_000580_060 Hb_003494_260 Hb_003494_260 Hb_156144_020--Hb_003494_260 Hb_001017_100 Hb_001017_100 Hb_156144_020--Hb_001017_100 Hb_007634_020 Hb_007634_020 Hb_156144_020--Hb_007634_020 Hb_171554_020 Hb_171554_020 Hb_001892_160--Hb_171554_020 Hb_000007_310 Hb_000007_310 Hb_001892_160--Hb_000007_310 Hb_132629_010 Hb_132629_010 Hb_001892_160--Hb_132629_010 Hb_000153_020 Hb_000153_020 Hb_001892_160--Hb_000153_020 Hb_177627_010 Hb_177627_010 Hb_001892_160--Hb_177627_010 Hb_001146_070 Hb_001146_070 Hb_000175_530--Hb_001146_070 Hb_000454_030 Hb_000454_030 Hb_000175_530--Hb_000454_030 Hb_000329_540 Hb_000329_540 Hb_000175_530--Hb_000329_540 Hb_000441_230 Hb_000441_230 Hb_000175_530--Hb_000441_230 Hb_005568_070 Hb_005568_070 Hb_000175_530--Hb_005568_070 Hb_000175_530--Hb_000580_060 Hb_010290_020 Hb_010290_020 Hb_000580_060--Hb_010290_020 Hb_000580_060--Hb_000441_230 Hb_004307_040 Hb_004307_040 Hb_000580_060--Hb_004307_040 Hb_000580_060--Hb_000454_030 Hb_003360_020 Hb_003360_020 Hb_000580_060--Hb_003360_020 Hb_000580_060--Hb_005568_070 Hb_000345_480 Hb_000345_480 Hb_003494_260--Hb_000345_480 Hb_000153_040 Hb_000153_040 Hb_003494_260--Hb_000153_040 Hb_003494_260--Hb_132629_010 Hb_075570_010 Hb_075570_010 Hb_003494_260--Hb_075570_010 Hb_003494_260--Hb_000007_310 Hb_013983_010 Hb_013983_010 Hb_003494_260--Hb_013983_010 Hb_005271_030 Hb_005271_030 Hb_001017_100--Hb_005271_030 Hb_001017_100--Hb_001146_070 Hb_002506_110 Hb_002506_110 Hb_001017_100--Hb_002506_110 Hb_000161_100 Hb_000161_100 Hb_001017_100--Hb_000161_100 Hb_000018_160 Hb_000018_160 Hb_001017_100--Hb_000018_160 Hb_001017_100--Hb_000441_230 Hb_002026_230 Hb_002026_230 Hb_007634_020--Hb_002026_230 Hb_000525_040 Hb_000525_040 Hb_007634_020--Hb_000525_040 Hb_000156_030 Hb_000156_030 Hb_007634_020--Hb_000156_030 Hb_007634_020--Hb_005568_070 Hb_007634_020--Hb_001892_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1341.42 16.042 6.60934 10.1106 1739.52 1098.49
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
106.608 21.6875 33.1788 19.7772 6.3031

CAGE analysis