Hb_002026_230

Information

Type -
Description -
Location Contig2026: 229044-229589
Sequence    

Annotation

kegg
ID egr:104455095
description uncharacterized protein At4g02000-like
nr
ID CCA66039.1
description hypothetical protein [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID F4NCI6
description Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID GO:0005488
description kinesin-4 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002026_230 0.0 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
2 Hb_000836_050 0.1185406476 - - -
3 Hb_012150_070 0.1254158815 - - hypothetical protein JCGZ_04984 [Jatropha curcas]
4 Hb_002609_100 0.12812447 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
5 Hb_007634_020 0.129223554 - - -
6 Hb_005568_070 0.1536525409 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
7 Hb_000018_160 0.1713496367 - - nitrate transporter, putative [Ricinus communis]
8 Hb_030414_050 0.1891737961 - - -
9 Hb_004307_040 0.1952288111 - - -
10 Hb_031862_170 0.1985660442 - - immunophilin, putative [Ricinus communis]
11 Hb_000329_540 0.2038999428 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
12 Hb_000525_040 0.2050367624 - - -
13 Hb_043655_010 0.2064457953 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
14 Hb_001691_050 0.2082457406 - - -
15 Hb_001892_160 0.2083769401 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
16 Hb_007382_040 0.2089507575 - - uncharacterized LOC105644857 [Jatropha curcas]
17 Hb_002897_040 0.2096308875 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
18 Hb_000175_530 0.2101771957 - - PREDICTED: uncharacterized protein LOC105136409 [Populus euphratica]
19 Hb_000580_060 0.2110118738 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
20 Hb_000156_030 0.2129046039 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002026_230 Hb_002026_230 Hb_000836_050 Hb_000836_050 Hb_002026_230--Hb_000836_050 Hb_012150_070 Hb_012150_070 Hb_002026_230--Hb_012150_070 Hb_002609_100 Hb_002609_100 Hb_002026_230--Hb_002609_100 Hb_007634_020 Hb_007634_020 Hb_002026_230--Hb_007634_020 Hb_005568_070 Hb_005568_070 Hb_002026_230--Hb_005568_070 Hb_000018_160 Hb_000018_160 Hb_002026_230--Hb_000018_160 Hb_030414_050 Hb_030414_050 Hb_000836_050--Hb_030414_050 Hb_000836_050--Hb_002609_100 Hb_043655_010 Hb_043655_010 Hb_000836_050--Hb_043655_010 Hb_000836_050--Hb_012150_070 Hb_002897_040 Hb_002897_040 Hb_000836_050--Hb_002897_040 Hb_012150_070--Hb_002609_100 Hb_012150_070--Hb_000018_160 Hb_012150_070--Hb_005568_070 Hb_000580_060 Hb_000580_060 Hb_012150_070--Hb_000580_060 Hb_004307_040 Hb_004307_040 Hb_012150_070--Hb_004307_040 Hb_007382_040 Hb_007382_040 Hb_002609_100--Hb_007382_040 Hb_000613_020 Hb_000613_020 Hb_002609_100--Hb_000613_020 Hb_002609_100--Hb_030414_050 Hb_003050_090 Hb_003050_090 Hb_002609_100--Hb_003050_090 Hb_000525_040 Hb_000525_040 Hb_007634_020--Hb_000525_040 Hb_000156_030 Hb_000156_030 Hb_007634_020--Hb_000156_030 Hb_007634_020--Hb_005568_070 Hb_156144_020 Hb_156144_020 Hb_007634_020--Hb_156144_020 Hb_001892_160 Hb_001892_160 Hb_007634_020--Hb_001892_160 Hb_031862_170 Hb_031862_170 Hb_005568_070--Hb_031862_170 Hb_005568_070--Hb_000018_160 Hb_000211_080 Hb_000211_080 Hb_005568_070--Hb_000211_080 Hb_000329_540 Hb_000329_540 Hb_005568_070--Hb_000329_540 Hb_004102_130 Hb_004102_130 Hb_005568_070--Hb_004102_130 Hb_003540_140 Hb_003540_140 Hb_005568_070--Hb_003540_140 Hb_000018_160--Hb_000211_080 Hb_035360_010 Hb_035360_010 Hb_000018_160--Hb_035360_010 Hb_000619_070 Hb_000619_070 Hb_000018_160--Hb_000619_070 Hb_000544_120 Hb_000544_120 Hb_000018_160--Hb_000544_120 Hb_000161_100 Hb_000161_100 Hb_000018_160--Hb_000161_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.02601 1.26631 0.117307 0 5.72536 3.52583
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.349732 0.366406 0.473386 0.0378019 0

CAGE analysis