Hb_004307_040

Information

Type -
Description -
Location Contig4307: 35958-36191
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004307_040 0.0 - - -
2 Hb_010290_020 0.1074951945 - - RAB6-interacting protein, putative [Ricinus communis]
3 Hb_000580_060 0.1327495853 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
4 Hb_005568_070 0.1455637418 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
5 Hb_027998_030 0.1629307793 - - laccase, putative [Ricinus communis]
6 Hb_003540_140 0.1639127272 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
7 Hb_000329_540 0.1689450938 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
8 Hb_000211_080 0.169224499 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
9 Hb_000441_230 0.169557329 - - unnamed protein product [Coffea canephora]
10 Hb_001892_160 0.176047405 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
11 Hb_012150_070 0.1796914503 - - hypothetical protein JCGZ_04984 [Jatropha curcas]
12 Hb_007634_020 0.1823105573 - - -
13 Hb_000175_530 0.1841257104 - - PREDICTED: uncharacterized protein LOC105136409 [Populus euphratica]
14 Hb_031862_170 0.1872565351 - - immunophilin, putative [Ricinus communis]
15 Hb_000156_030 0.1879458847 - - conserved hypothetical protein [Ricinus communis]
16 Hb_022749_030 0.1885367427 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
17 Hb_171554_020 0.1896534993 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
18 Hb_000005_320 0.190264471 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000211_070 0.1924722907 - - isoleucyl tRNA synthetase, putative [Ricinus communis]
20 Hb_172256_010 0.1949693263 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]

Gene co-expression network

sample Hb_004307_040 Hb_004307_040 Hb_010290_020 Hb_010290_020 Hb_004307_040--Hb_010290_020 Hb_000580_060 Hb_000580_060 Hb_004307_040--Hb_000580_060 Hb_005568_070 Hb_005568_070 Hb_004307_040--Hb_005568_070 Hb_027998_030 Hb_027998_030 Hb_004307_040--Hb_027998_030 Hb_003540_140 Hb_003540_140 Hb_004307_040--Hb_003540_140 Hb_000329_540 Hb_000329_540 Hb_004307_040--Hb_000329_540 Hb_010290_020--Hb_000580_060 Hb_010290_020--Hb_003540_140 Hb_010290_020--Hb_005568_070 Hb_003360_020 Hb_003360_020 Hb_010290_020--Hb_003360_020 Hb_010290_020--Hb_000329_540 Hb_000441_230 Hb_000441_230 Hb_000580_060--Hb_000441_230 Hb_000454_030 Hb_000454_030 Hb_000580_060--Hb_000454_030 Hb_000580_060--Hb_003360_020 Hb_000580_060--Hb_005568_070 Hb_031862_170 Hb_031862_170 Hb_005568_070--Hb_031862_170 Hb_000018_160 Hb_000018_160 Hb_005568_070--Hb_000018_160 Hb_000211_080 Hb_000211_080 Hb_005568_070--Hb_000211_080 Hb_005568_070--Hb_000329_540 Hb_004102_130 Hb_004102_130 Hb_005568_070--Hb_004102_130 Hb_005568_070--Hb_003540_140 Hb_000175_530 Hb_000175_530 Hb_027998_030--Hb_000175_530 Hb_007634_020 Hb_007634_020 Hb_027998_030--Hb_007634_020 Hb_027998_030--Hb_000580_060 Hb_000559_050 Hb_000559_050 Hb_027998_030--Hb_000559_050 Hb_001892_160 Hb_001892_160 Hb_027998_030--Hb_001892_160 Hb_002769_040 Hb_002769_040 Hb_003540_140--Hb_002769_040 Hb_003540_140--Hb_000441_230 Hb_003540_140--Hb_000329_540 Hb_000156_030 Hb_000156_030 Hb_003540_140--Hb_000156_030 Hb_061256_030 Hb_061256_030 Hb_003540_140--Hb_061256_030 Hb_003226_170 Hb_003226_170 Hb_003540_140--Hb_003226_170 Hb_000329_540--Hb_000441_230 Hb_000329_540--Hb_000156_030 Hb_000329_540--Hb_000175_530 Hb_000329_540--Hb_000580_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
99.3582 6.32367 3.53685 0 58.9064 85.8781
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.24465 2.48852 6.03763 7.31764 0.801548

CAGE analysis