Hb_000018_160

Information

Type -
Description -
Location Contig18: 202655-206409
Sequence    

Annotation

kegg
ID rcu:RCOM_0802140
description nitrate transporter, putative
nr
ID XP_002516544.1
description nitrate transporter, putative [Ricinus communis]
swissprot
ID Q9M817
description Protein NRT1/ PTR FAMILY 1.2 OS=Arabidopsis thaliana GN=NPF1.2 PE=1 SV=1
trembl
ID B9RS25
description Nitrate transporter, putative OS=Ricinus communis GN=RCOM_0802140 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17428: 205406-205699
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000018_160 0.0 - - nitrate transporter, putative [Ricinus communis]
2 Hb_000211_080 0.1095843183 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
3 Hb_035360_010 0.1122091987 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
4 Hb_005568_070 0.1174334929 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
5 Hb_000619_070 0.1179077546 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
6 Hb_000544_120 0.1242124438 - - PREDICTED: thymidylate kinase [Jatropha curcas]
7 Hb_000161_100 0.1334724234 - - Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao]
8 Hb_000792_110 0.1350529457 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
9 Hb_000173_210 0.1358729565 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
10 Hb_003673_020 0.1366078403 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
11 Hb_002897_040 0.1414177619 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
12 Hb_000212_130 0.1426396055 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012150_070 0.1430428341 - - hypothetical protein JCGZ_04984 [Jatropha curcas]
14 Hb_006631_010 0.1431993776 - - plasma membrane aquaporin 2 [Hevea brasiliensis]
15 Hb_000016_180 0.1431999464 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
16 Hb_000156_030 0.1433247612 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000779_040 0.1448491779 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
18 Hb_004102_130 0.1451307233 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000173_370 0.1453622953 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
20 Hb_172256_010 0.148378175 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]

Gene co-expression network

sample Hb_000018_160 Hb_000018_160 Hb_000211_080 Hb_000211_080 Hb_000018_160--Hb_000211_080 Hb_035360_010 Hb_035360_010 Hb_000018_160--Hb_035360_010 Hb_005568_070 Hb_005568_070 Hb_000018_160--Hb_005568_070 Hb_000619_070 Hb_000619_070 Hb_000018_160--Hb_000619_070 Hb_000544_120 Hb_000544_120 Hb_000018_160--Hb_000544_120 Hb_000161_100 Hb_000161_100 Hb_000018_160--Hb_000161_100 Hb_172256_010 Hb_172256_010 Hb_000211_080--Hb_172256_010 Hb_003673_020 Hb_003673_020 Hb_000211_080--Hb_003673_020 Hb_000779_040 Hb_000779_040 Hb_000211_080--Hb_000779_040 Hb_000792_110 Hb_000792_110 Hb_000211_080--Hb_000792_110 Hb_000211_080--Hb_035360_010 Hb_000211_090 Hb_000211_090 Hb_000211_080--Hb_000211_090 Hb_035360_010--Hb_000619_070 Hb_035360_010--Hb_003673_020 Hb_035360_010--Hb_000792_110 Hb_035360_010--Hb_000779_040 Hb_000608_340 Hb_000608_340 Hb_035360_010--Hb_000608_340 Hb_035360_010--Hb_000211_090 Hb_031862_170 Hb_031862_170 Hb_005568_070--Hb_031862_170 Hb_005568_070--Hb_000211_080 Hb_000329_540 Hb_000329_540 Hb_005568_070--Hb_000329_540 Hb_004102_130 Hb_004102_130 Hb_005568_070--Hb_004102_130 Hb_003540_140 Hb_003540_140 Hb_005568_070--Hb_003540_140 Hb_000619_070--Hb_000608_340 Hb_000619_070--Hb_000779_040 Hb_000619_070--Hb_003673_020 Hb_045502_010 Hb_045502_010 Hb_000619_070--Hb_045502_010 Hb_019871_020 Hb_019871_020 Hb_000619_070--Hb_019871_020 Hb_006631_010 Hb_006631_010 Hb_000544_120--Hb_006631_010 Hb_000544_120--Hb_035360_010 Hb_000544_120--Hb_000619_070 Hb_002897_040 Hb_002897_040 Hb_000544_120--Hb_002897_040 Hb_000173_210 Hb_000173_210 Hb_000544_120--Hb_000173_210 Hb_000161_100--Hb_000211_080 Hb_000156_030 Hb_000156_030 Hb_000161_100--Hb_000156_030 Hb_000161_100--Hb_003673_020 Hb_000005_320 Hb_000005_320 Hb_000161_100--Hb_000005_320 Hb_031073_010 Hb_031073_010 Hb_000161_100--Hb_031073_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.03698 2.25185 0.485684 0.421583 12.4135 8.41703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.83096 0.344012 1.33863 0.342779 0.135558

CAGE analysis