Hb_000005_320

Information

Type -
Description -
Location Contig5: 396053-400502
Sequence    

Annotation

kegg
ID rcu:RCOM_1288380
description hypothetical protein
nr
ID XP_002531051.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SYI2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1288380 PE=4 SV=1
Gene Ontology
ID GO:0009507
description plastid transcriptionally active 12 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45712: 394800-395087 , PASA_asmbl_45713: 394818-395270
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_320 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003673_020 0.1250216313 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
3 Hb_000156_030 0.1317448034 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000161_100 0.1336910816 - - Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao]
5 Hb_061256_030 0.1351914325 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
6 Hb_003226_170 0.1385107389 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
7 Hb_002897_040 0.1410600466 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
8 Hb_000613_020 0.142156066 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
9 Hb_003580_040 0.1434548866 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2-like [Jatropha curcas]
10 Hb_000211_090 0.1453760709 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
11 Hb_035360_010 0.1457286067 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
12 Hb_010189_010 0.1462182808 - - -
13 Hb_003666_050 0.1505530463 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
14 Hb_004032_460 0.1506837297 - - -
15 Hb_000211_080 0.1552353831 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
16 Hb_002837_070 0.1565612652 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
17 Hb_000025_750 0.1567632254 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
18 Hb_000792_110 0.1579833292 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
19 Hb_000779_040 0.1589942196 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
20 Hb_000849_150 0.1591975202 - - hypothetical protein JCGZ_15099 [Jatropha curcas]

Gene co-expression network

sample Hb_000005_320 Hb_000005_320 Hb_003673_020 Hb_003673_020 Hb_000005_320--Hb_003673_020 Hb_000156_030 Hb_000156_030 Hb_000005_320--Hb_000156_030 Hb_000161_100 Hb_000161_100 Hb_000005_320--Hb_000161_100 Hb_061256_030 Hb_061256_030 Hb_000005_320--Hb_061256_030 Hb_003226_170 Hb_003226_170 Hb_000005_320--Hb_003226_170 Hb_002897_040 Hb_002897_040 Hb_000005_320--Hb_002897_040 Hb_035360_010 Hb_035360_010 Hb_003673_020--Hb_035360_010 Hb_000779_040 Hb_000779_040 Hb_003673_020--Hb_000779_040 Hb_000211_090 Hb_000211_090 Hb_003673_020--Hb_000211_090 Hb_000211_080 Hb_000211_080 Hb_003673_020--Hb_000211_080 Hb_000619_070 Hb_000619_070 Hb_003673_020--Hb_000619_070 Hb_003666_050 Hb_003666_050 Hb_003673_020--Hb_003666_050 Hb_003540_140 Hb_003540_140 Hb_000156_030--Hb_003540_140 Hb_000329_540 Hb_000329_540 Hb_000156_030--Hb_000329_540 Hb_000156_030--Hb_000161_100 Hb_004032_460 Hb_004032_460 Hb_000156_030--Hb_004032_460 Hb_000441_230 Hb_000441_230 Hb_000156_030--Hb_000441_230 Hb_000156_030--Hb_002897_040 Hb_000161_100--Hb_000211_080 Hb_000161_100--Hb_003673_020 Hb_000018_160 Hb_000018_160 Hb_000161_100--Hb_000018_160 Hb_031073_010 Hb_031073_010 Hb_000161_100--Hb_031073_010 Hb_002837_070 Hb_002837_070 Hb_061256_030--Hb_002837_070 Hb_061256_030--Hb_003226_170 Hb_061256_030--Hb_003673_020 Hb_174865_050 Hb_174865_050 Hb_061256_030--Hb_174865_050 Hb_010189_010 Hb_010189_010 Hb_061256_030--Hb_010189_010 Hb_009421_100 Hb_009421_100 Hb_061256_030--Hb_009421_100 Hb_003226_170--Hb_003673_020 Hb_003226_170--Hb_002837_070 Hb_001846_080 Hb_001846_080 Hb_003226_170--Hb_001846_080 Hb_003226_170--Hb_174865_050 Hb_005016_150 Hb_005016_150 Hb_003226_170--Hb_005016_150 Hb_006631_010 Hb_006631_010 Hb_002897_040--Hb_006631_010 Hb_000173_210 Hb_000173_210 Hb_002897_040--Hb_000173_210 Hb_000544_120 Hb_000544_120 Hb_002897_040--Hb_000544_120 Hb_000849_150 Hb_000849_150 Hb_002897_040--Hb_000849_150 Hb_000025_750 Hb_000025_750 Hb_002897_040--Hb_000025_750 Hb_000173_370 Hb_000173_370 Hb_002897_040--Hb_000173_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.485 1.56826 2.61489 0.346178 14.6106 14.4012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.65099 1.39934 0.784133 0.734943 1.43811

CAGE analysis