Hb_000544_120

Information

Type -
Description -
Location Contig544: 159159-162671
Sequence    

Annotation

kegg
ID rcu:RCOM_1679040
description thymidylate kinase, putative (EC:2.7.4.9)
nr
ID XP_012071017.1
description PREDICTED: thymidylate kinase [Jatropha curcas]
swissprot
ID Q54GN2
description Thymidylate kinase OS=Dictyostelium discoideum GN=dtymk PE=3 SV=1
trembl
ID B9RBN0
description Thymidylate kinase, putative OS=Ricinus communis GN=RCOM_1679040 PE=3 SV=1
Gene Ontology
ID GO:0043231
description thymidylate kinase-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47933: 159198-162696
cDNA
(Sanger)
(ID:Location)		 021_O22.ab1: 159510-162640

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000544_120 0.0 - - PREDICTED: thymidylate kinase [Jatropha curcas]
2 Hb_006631_010 0.0942045102 - - plasma membrane aquaporin 2 [Hevea brasiliensis]
3 Hb_035360_010 0.0970834306 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
4 Hb_000619_070 0.1049766186 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
5 Hb_002897_040 0.1062031886 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
6 Hb_000173_210 0.1208907471 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
7 Hb_000018_160 0.1242124438 - - nitrate transporter, putative [Ricinus communis]
8 Hb_045502_010 0.1322544806 - - prefoldin subunit 1 [Jatropha curcas]
9 Hb_003673_020 0.1358441574 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
10 Hb_000212_130 0.1382058818 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000101_210 0.1383982267 - - PREDICTED: uncharacterized protein LOC105646445 [Jatropha curcas]
12 Hb_000779_040 0.142591786 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
13 Hb_063409_020 0.1434776632 - - Calcium-binding protein, putative [Ricinus communis]
14 Hb_031073_010 0.1438404512 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
15 Hb_140595_010 0.1440223754 - - -
16 Hb_000608_340 0.1456379675 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
17 Hb_000792_110 0.1489148035 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
18 Hb_000392_280 0.1523790299 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
19 Hb_000580_130 0.1532791442 - - hypothetical protein JCGZ_14541 [Jatropha curcas]
20 Hb_002903_120 0.1533524171 - - -

Gene co-expression network

sample Hb_000544_120 Hb_000544_120 Hb_006631_010 Hb_006631_010 Hb_000544_120--Hb_006631_010 Hb_035360_010 Hb_035360_010 Hb_000544_120--Hb_035360_010 Hb_000619_070 Hb_000619_070 Hb_000544_120--Hb_000619_070 Hb_002897_040 Hb_002897_040 Hb_000544_120--Hb_002897_040 Hb_000173_210 Hb_000173_210 Hb_000544_120--Hb_000173_210 Hb_000018_160 Hb_000018_160 Hb_000544_120--Hb_000018_160 Hb_006631_010--Hb_002897_040 Hb_006631_010--Hb_000619_070 Hb_000016_280 Hb_000016_280 Hb_006631_010--Hb_000016_280 Hb_006631_010--Hb_035360_010 Hb_000608_340 Hb_000608_340 Hb_006631_010--Hb_000608_340 Hb_035360_010--Hb_000619_070 Hb_003673_020 Hb_003673_020 Hb_035360_010--Hb_003673_020 Hb_000792_110 Hb_000792_110 Hb_035360_010--Hb_000792_110 Hb_000779_040 Hb_000779_040 Hb_035360_010--Hb_000779_040 Hb_035360_010--Hb_000608_340 Hb_000211_090 Hb_000211_090 Hb_035360_010--Hb_000211_090 Hb_000619_070--Hb_000608_340 Hb_000619_070--Hb_000779_040 Hb_000619_070--Hb_003673_020 Hb_045502_010 Hb_045502_010 Hb_000619_070--Hb_045502_010 Hb_019871_020 Hb_019871_020 Hb_000619_070--Hb_019871_020 Hb_002897_040--Hb_000173_210 Hb_000849_150 Hb_000849_150 Hb_002897_040--Hb_000849_150 Hb_000025_750 Hb_000025_750 Hb_002897_040--Hb_000025_750 Hb_000173_370 Hb_000173_370 Hb_002897_040--Hb_000173_370 Hb_000392_280 Hb_000392_280 Hb_000173_210--Hb_000392_280 Hb_000173_210--Hb_000173_370 Hb_000173_210--Hb_000619_070 Hb_000173_210--Hb_006631_010 Hb_000173_210--Hb_035360_010 Hb_000211_080 Hb_000211_080 Hb_000018_160--Hb_000211_080 Hb_000018_160--Hb_035360_010 Hb_005568_070 Hb_005568_070 Hb_000018_160--Hb_005568_070 Hb_000018_160--Hb_000619_070 Hb_000161_100 Hb_000161_100 Hb_000018_160--Hb_000161_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.4593 26.1257 19.5125 6.6837 133.237 78.3415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0855 6.40855 8.76533 8.21553 1.97873

CAGE analysis