Hb_002897_040

Information

Type -
Description -
Location Contig2897: 43834-46080
Sequence    

Annotation

kegg
ID rcu:RCOM_0690140
description Myosin heavy chain, embryonic smooth muscle isoform, putative
nr
ID XP_012091115.1
description PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
swissprot
ID F4KEW8
description Protein NETWORKED 4A OS=Arabidopsis thaliana GN=NET4A PE=2 SV=1
trembl
ID B9S4G6
description Myosin heavy chain, embryonic smooth muscle isoform, putative OS=Ricinus communis GN=RCOM_0690140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30319: 44616-45043
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002897_040 0.0 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
2 Hb_006631_010 0.1020885034 - - plasma membrane aquaporin 2 [Hevea brasiliensis]
3 Hb_000173_210 0.1040544409 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
4 Hb_000544_120 0.1062031886 - - PREDICTED: thymidylate kinase [Jatropha curcas]
5 Hb_000849_150 0.110579259 - - hypothetical protein JCGZ_15099 [Jatropha curcas]
6 Hb_000025_750 0.1136010145 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
7 Hb_000173_370 0.119344165 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
8 Hb_001473_190 0.1283317391 - - 50S ribosomal protein L20 [Hevea brasiliensis]
9 Hb_063409_020 0.1291844822 - - Calcium-binding protein, putative [Ricinus communis]
10 Hb_004032_460 0.1307478052 - - -
11 Hb_000392_280 0.1314126521 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
12 Hb_000156_030 0.1314647999 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000613_020 0.1318342808 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
14 Hb_004531_090 0.1348773501 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
15 Hb_002903_120 0.1352343913 - - -
16 Hb_060437_010 0.1384212389 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
17 Hb_035360_010 0.1385147938 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
18 Hb_000093_130 0.1392563585 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
19 Hb_000692_170 0.1399848885 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
20 Hb_000544_040 0.1404916461 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]

Gene co-expression network

sample Hb_002897_040 Hb_002897_040 Hb_006631_010 Hb_006631_010 Hb_002897_040--Hb_006631_010 Hb_000173_210 Hb_000173_210 Hb_002897_040--Hb_000173_210 Hb_000544_120 Hb_000544_120 Hb_002897_040--Hb_000544_120 Hb_000849_150 Hb_000849_150 Hb_002897_040--Hb_000849_150 Hb_000025_750 Hb_000025_750 Hb_002897_040--Hb_000025_750 Hb_000173_370 Hb_000173_370 Hb_002897_040--Hb_000173_370 Hb_006631_010--Hb_000544_120 Hb_000619_070 Hb_000619_070 Hb_006631_010--Hb_000619_070 Hb_000016_280 Hb_000016_280 Hb_006631_010--Hb_000016_280 Hb_035360_010 Hb_035360_010 Hb_006631_010--Hb_035360_010 Hb_000608_340 Hb_000608_340 Hb_006631_010--Hb_000608_340 Hb_000392_280 Hb_000392_280 Hb_000173_210--Hb_000392_280 Hb_000173_210--Hb_000173_370 Hb_000173_210--Hb_000619_070 Hb_000173_210--Hb_006631_010 Hb_000173_210--Hb_035360_010 Hb_000544_120--Hb_035360_010 Hb_000544_120--Hb_000619_070 Hb_000544_120--Hb_000173_210 Hb_000018_160 Hb_000018_160 Hb_000544_120--Hb_000018_160 Hb_000849_150--Hb_000025_750 Hb_004032_460 Hb_004032_460 Hb_000849_150--Hb_004032_460 Hb_060437_010 Hb_060437_010 Hb_000849_150--Hb_060437_010 Hb_001408_090 Hb_001408_090 Hb_000849_150--Hb_001408_090 Hb_005725_070 Hb_005725_070 Hb_000849_150--Hb_005725_070 Hb_001227_110 Hb_001227_110 Hb_000025_750--Hb_001227_110 Hb_000025_750--Hb_001408_090 Hb_000692_170 Hb_000692_170 Hb_000025_750--Hb_000692_170 Hb_000093_130 Hb_000093_130 Hb_000025_750--Hb_000093_130 Hb_002025_140 Hb_002025_140 Hb_000025_750--Hb_002025_140 Hb_000173_370--Hb_002025_140 Hb_000173_370--Hb_004032_460 Hb_000088_180 Hb_000088_180 Hb_000173_370--Hb_000088_180 Hb_004531_090 Hb_004531_090 Hb_000173_370--Hb_004531_090 Hb_000573_040 Hb_000573_040 Hb_000173_370--Hb_000573_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.0682 7.89812 7.48539 1.85578 42.8053 23.2063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.18948 2.87452 5.149 3.06074 1.5551

CAGE analysis