Hb_000329_540

Information

Type transcription factor
Description TF Family: SBP
Location Contig329: 428244-430365
Sequence    

Annotation

kegg
ID pop:POPTR_0014s05690g
description hypothetical protein
nr
ID XP_012083645.1
description PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
swissprot
ID Q01JD1
description Squamosa promoter-binding-like protein 7 OS=Oryza sativa subsp. indica GN=SPL7 PE=2 SV=1
trembl
ID A0A067K966
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14586 PE=4 SV=1
Gene Ontology
ID GO:0005634
description squamosa promoter-binding-like protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34554: 429186-430513
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_540 0.0 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
2 Hb_000441_230 0.0928706145 - - unnamed protein product [Coffea canephora]
3 Hb_003540_140 0.111083987 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
4 Hb_000156_030 0.1264726667 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005568_070 0.1266143435 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
6 Hb_000175_530 0.1378908062 - - PREDICTED: uncharacterized protein LOC105136409 [Populus euphratica]
7 Hb_000580_060 0.1435372411 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
8 Hb_061256_030 0.1469420099 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
9 Hb_003226_170 0.1487799118 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
10 Hb_002506_110 0.1490643698 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
11 Hb_005271_030 0.1506077582 - - copper-transporting atpase p-type, putative [Ricinus communis]
12 Hb_010290_020 0.151499672 - - RAB6-interacting protein, putative [Ricinus communis]
13 Hb_000454_030 0.1520473902 - - -
14 Hb_000056_120 0.1533226618 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
15 Hb_000252_090 0.1566876143 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
16 Hb_031862_170 0.1568994962 - - immunophilin, putative [Ricinus communis]
17 Hb_000018_160 0.1615470537 - - nitrate transporter, putative [Ricinus communis]
18 Hb_000365_350 0.1619691694 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
19 Hb_001017_100 0.1645813185 - - PREDICTED: uncharacterized protein LOC105644705 [Jatropha curcas]
20 Hb_003360_020 0.1656486816 - - hypothetical protein POPTR_0016s07860g [Populus trichocarpa]

Gene co-expression network

sample Hb_000329_540 Hb_000329_540 Hb_000441_230 Hb_000441_230 Hb_000329_540--Hb_000441_230 Hb_003540_140 Hb_003540_140 Hb_000329_540--Hb_003540_140 Hb_000156_030 Hb_000156_030 Hb_000329_540--Hb_000156_030 Hb_005568_070 Hb_005568_070 Hb_000329_540--Hb_005568_070 Hb_000175_530 Hb_000175_530 Hb_000329_540--Hb_000175_530 Hb_000580_060 Hb_000580_060 Hb_000329_540--Hb_000580_060 Hb_000441_230--Hb_003540_140 Hb_002506_110 Hb_002506_110 Hb_000441_230--Hb_002506_110 Hb_003226_170 Hb_003226_170 Hb_000441_230--Hb_003226_170 Hb_005271_030 Hb_005271_030 Hb_000441_230--Hb_005271_030 Hb_000441_230--Hb_000580_060 Hb_002769_040 Hb_002769_040 Hb_003540_140--Hb_002769_040 Hb_003540_140--Hb_000156_030 Hb_061256_030 Hb_061256_030 Hb_003540_140--Hb_061256_030 Hb_003540_140--Hb_003226_170 Hb_000161_100 Hb_000161_100 Hb_000156_030--Hb_000161_100 Hb_004032_460 Hb_004032_460 Hb_000156_030--Hb_004032_460 Hb_000156_030--Hb_000441_230 Hb_002897_040 Hb_002897_040 Hb_000156_030--Hb_002897_040 Hb_031862_170 Hb_031862_170 Hb_005568_070--Hb_031862_170 Hb_000018_160 Hb_000018_160 Hb_005568_070--Hb_000018_160 Hb_000211_080 Hb_000211_080 Hb_005568_070--Hb_000211_080 Hb_004102_130 Hb_004102_130 Hb_005568_070--Hb_004102_130 Hb_005568_070--Hb_003540_140 Hb_001146_070 Hb_001146_070 Hb_000175_530--Hb_001146_070 Hb_000454_030 Hb_000454_030 Hb_000175_530--Hb_000454_030 Hb_000175_530--Hb_000441_230 Hb_000175_530--Hb_005568_070 Hb_000175_530--Hb_000580_060 Hb_010290_020 Hb_010290_020 Hb_000580_060--Hb_010290_020 Hb_004307_040 Hb_004307_040 Hb_000580_060--Hb_004307_040 Hb_000580_060--Hb_000454_030 Hb_003360_020 Hb_003360_020 Hb_000580_060--Hb_003360_020 Hb_000580_060--Hb_005568_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7813 0.833736 0.785025 1.23728 12.2199 14.135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.25847 0.935039 1.74117 0.187215 0

CAGE analysis