Hb_002506_110

Information

Type -
Description -
Location Contig2506: 165100-167851
Sequence    

Annotation

kegg
ID pop:POPTR_0009s13510g
description POPTRDRAFT_721765; hypothetical protein
nr
ID XP_012081744.1
description PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
swissprot
ID P28493
description Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1
trembl
ID A0A067K080
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18788 PE=4 SV=1
Gene Ontology
ID GO:0031225
description thaumatin-like protein 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26215: 165340-167718
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002506_110 0.0 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
2 Hb_000376_150 0.09059302 - - O-acyltransferase WSD1 [Gossypium arboreum]
3 Hb_009193_130 0.0970988704 - - hypothetical protein RCOM_1620550 [Ricinus communis]
4 Hb_098315_100 0.0999626911 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
5 Hb_005271_030 0.1006748436 - - copper-transporting atpase p-type, putative [Ricinus communis]
6 Hb_000856_100 0.1032441506 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
7 Hb_007158_030 0.1139719132 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_029464_010 0.1167122067 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
9 Hb_000441_230 0.1171795768 - - unnamed protein product [Coffea canephora]
10 Hb_002627_060 0.1216927777 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
11 Hb_000172_610 0.1299803508 - - hypothetical protein POPTR_0017s02240g, partial [Populus trichocarpa]
12 Hb_000033_060 0.1326205547 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
13 Hb_003360_020 0.1371655959 - - hypothetical protein POPTR_0016s07860g [Populus trichocarpa]
14 Hb_003540_140 0.1384877367 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
15 Hb_000329_620 0.139543113 - - PREDICTED: uncharacterized protein LOC105643215 [Jatropha curcas]
16 Hb_001017_100 0.1423752238 - - PREDICTED: uncharacterized protein LOC105644705 [Jatropha curcas]
17 Hb_000155_080 0.1443896009 - - guanylate-binding family protein [Populus trichocarpa]
18 Hb_000329_540 0.1490643698 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
19 Hb_000365_350 0.1503243226 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
20 Hb_019654_070 0.1536346946 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002506_110 Hb_002506_110 Hb_000376_150 Hb_000376_150 Hb_002506_110--Hb_000376_150 Hb_009193_130 Hb_009193_130 Hb_002506_110--Hb_009193_130 Hb_098315_100 Hb_098315_100 Hb_002506_110--Hb_098315_100 Hb_005271_030 Hb_005271_030 Hb_002506_110--Hb_005271_030 Hb_000856_100 Hb_000856_100 Hb_002506_110--Hb_000856_100 Hb_007158_030 Hb_007158_030 Hb_002506_110--Hb_007158_030 Hb_000376_150--Hb_098315_100 Hb_003304_080 Hb_003304_080 Hb_000376_150--Hb_003304_080 Hb_002627_060 Hb_002627_060 Hb_000376_150--Hb_002627_060 Hb_000172_610 Hb_000172_610 Hb_000376_150--Hb_000172_610 Hb_000050_120 Hb_000050_120 Hb_000376_150--Hb_000050_120 Hb_029464_010 Hb_029464_010 Hb_009193_130--Hb_029464_010 Hb_009193_130--Hb_007158_030 Hb_009193_130--Hb_000856_100 Hb_009193_130--Hb_005271_030 Hb_009193_130--Hb_098315_100 Hb_098315_100--Hb_000856_100 Hb_019654_070 Hb_019654_070 Hb_098315_100--Hb_019654_070 Hb_000365_350 Hb_000365_350 Hb_098315_100--Hb_000365_350 Hb_000155_080 Hb_000155_080 Hb_098315_100--Hb_000155_080 Hb_005271_030--Hb_029464_010 Hb_001146_070 Hb_001146_070 Hb_005271_030--Hb_001146_070 Hb_005271_030--Hb_007158_030 Hb_001017_100 Hb_001017_100 Hb_005271_030--Hb_001017_100 Hb_000856_100--Hb_019654_070 Hb_000856_100--Hb_005271_030 Hb_000856_100--Hb_000155_080 Hb_007158_030--Hb_029464_010 Hb_000329_620 Hb_000329_620 Hb_007158_030--Hb_000329_620 Hb_000603_200 Hb_000603_200 Hb_007158_030--Hb_000603_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
637.581 6.77811 5.49197 40.9825 511.427 583.694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
260.15 38.8281 97.9152 12.0709 3.93115

CAGE analysis