Hb_098315_100

Information

Type -
Description -
Location Contig98315: 66010-66900
Sequence    

Annotation

kegg
ID pop:POPTR_0009s08240g
description POPTRDRAFT_767777; hypothetical protein
nr
ID XP_012074589.1
description PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
swissprot
ID Q0WNW4
description Myosin-binding protein 3 OS=Arabidopsis thaliana GN=MYOB3 PE=1 SV=1
trembl
ID B9HN81
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s08240g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64505: 64082-66640 , PASA_asmbl_64506: 65832-67391 , PASA_asmbl_64507: 64389-66642
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_098315_100 0.0 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
2 Hb_000856_100 0.0636953488 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
3 Hb_019654_070 0.0787401698 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
4 Hb_000376_150 0.0872884499 - - O-acyltransferase WSD1 [Gossypium arboreum]
5 Hb_000365_350 0.0942354149 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
6 Hb_009193_130 0.0951877668 - - hypothetical protein RCOM_1620550 [Ricinus communis]
7 Hb_000155_080 0.0952401385 - - guanylate-binding family protein [Populus trichocarpa]
8 Hb_002506_110 0.0999626911 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
9 Hb_000172_610 0.1075296861 - - hypothetical protein POPTR_0017s02240g, partial [Populus trichocarpa]
10 Hb_001846_080 0.1090763659 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
11 Hb_000050_120 0.1092790346 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
12 Hb_000483_370 0.1094101877 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000603_200 0.1104472354 - - PREDICTED: myosin-15 [Jatropha curcas]
14 Hb_012807_120 0.1106252801 - - metal ion binding protein, putative [Ricinus communis]
15 Hb_002627_060 0.1106783002 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
16 Hb_000172_530 0.1127530831 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]
17 Hb_000565_020 0.1130382433 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
18 Hb_000033_060 0.1161749539 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
19 Hb_006478_070 0.1168605649 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
20 Hb_005271_030 0.1184935422 - - copper-transporting atpase p-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_098315_100 Hb_098315_100 Hb_000856_100 Hb_000856_100 Hb_098315_100--Hb_000856_100 Hb_019654_070 Hb_019654_070 Hb_098315_100--Hb_019654_070 Hb_000376_150 Hb_000376_150 Hb_098315_100--Hb_000376_150 Hb_000365_350 Hb_000365_350 Hb_098315_100--Hb_000365_350 Hb_009193_130 Hb_009193_130 Hb_098315_100--Hb_009193_130 Hb_000155_080 Hb_000155_080 Hb_098315_100--Hb_000155_080 Hb_000856_100--Hb_009193_130 Hb_002506_110 Hb_002506_110 Hb_000856_100--Hb_002506_110 Hb_000856_100--Hb_019654_070 Hb_005271_030 Hb_005271_030 Hb_000856_100--Hb_005271_030 Hb_000856_100--Hb_000155_080 Hb_019654_070--Hb_000155_080 Hb_003656_030 Hb_003656_030 Hb_019654_070--Hb_003656_030 Hb_000085_340 Hb_000085_340 Hb_019654_070--Hb_000085_340 Hb_005488_100 Hb_005488_100 Hb_019654_070--Hb_005488_100 Hb_007178_010 Hb_007178_010 Hb_019654_070--Hb_007178_010 Hb_000376_150--Hb_002506_110 Hb_003304_080 Hb_003304_080 Hb_000376_150--Hb_003304_080 Hb_002627_060 Hb_002627_060 Hb_000376_150--Hb_002627_060 Hb_000172_610 Hb_000172_610 Hb_000376_150--Hb_000172_610 Hb_000050_120 Hb_000050_120 Hb_000376_150--Hb_000050_120 Hb_012807_120 Hb_012807_120 Hb_000365_350--Hb_012807_120 Hb_000365_350--Hb_000050_120 Hb_000088_180 Hb_000088_180 Hb_000365_350--Hb_000088_180 Hb_004032_460 Hb_004032_460 Hb_000365_350--Hb_004032_460 Hb_006478_070 Hb_006478_070 Hb_000365_350--Hb_006478_070 Hb_029464_010 Hb_029464_010 Hb_009193_130--Hb_029464_010 Hb_007158_030 Hb_007158_030 Hb_009193_130--Hb_007158_030 Hb_009193_130--Hb_005271_030 Hb_009193_130--Hb_002506_110 Hb_000155_080--Hb_000172_610 Hb_000155_080--Hb_002627_060 Hb_000155_080--Hb_009193_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1177.75 49.8696 11.0726 72.0284 889.507 1144.28
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
534.294 166.832 313.974 65.567 20.0997

CAGE analysis