Hb_002627_060

Information

Type transcription factor
Description TF Family: MYB
Location Contig2627: 136571-138925
Sequence    

Annotation

kegg
ID tcc:TCM_018082
description Duplicated homeodomain-like superfamily protein, putative
nr
ID XP_007032351.1
description Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
swissprot
ID P81393
description Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1
trembl
ID A0A061EFX6
description Duplicated homeodomain-like superfamily protein, putative OS=Theobroma cacao GN=TCM_018082 PE=4 SV=1
Gene Ontology
ID GO:0005488
description duplicated homeodomain-like superfamily

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27430: 133852-135990 , PASA_asmbl_27433: 129801-135966 , PASA_asmbl_27434: 136979-138574
cDNA
(Sanger)
(ID:Location)		 038_I06.ab1: 133852-135727

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002627_060 0.0 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
2 Hb_000172_610 0.070733921 - - hypothetical protein POPTR_0017s02240g, partial [Populus trichocarpa]
3 Hb_126669_010 0.1016617273 transcription factor TF Family: bHLH lMYC4 [Hevea brasiliensis]
4 Hb_000155_080 0.1021040609 - - guanylate-binding family protein [Populus trichocarpa]
5 Hb_009193_130 0.1032558253 - - hypothetical protein RCOM_1620550 [Ricinus communis]
6 Hb_098315_100 0.1106783002 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
7 Hb_000270_400 0.1123692709 - - lipase, putative [Ricinus communis]
8 Hb_000033_060 0.1124852348 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
9 Hb_000376_150 0.1143025506 - - O-acyltransferase WSD1 [Gossypium arboreum]
10 Hb_000603_200 0.1152681197 - - PREDICTED: myosin-15 [Jatropha curcas]
11 Hb_000523_020 0.1159994765 - - PREDICTED: uncharacterized protein LOC105650610 [Jatropha curcas]
12 Hb_002506_110 0.1216927777 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
13 Hb_000856_100 0.1229244936 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
14 Hb_170116_010 0.1234951869 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
15 Hb_007158_030 0.1235579487 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_003636_090 0.1241754457 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
17 Hb_004254_040 0.125821065 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
18 Hb_000928_230 0.1283440851 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001635_220 0.1288069782 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
20 Hb_043637_010 0.1293807492 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_002627_060 Hb_002627_060 Hb_000172_610 Hb_000172_610 Hb_002627_060--Hb_000172_610 Hb_126669_010 Hb_126669_010 Hb_002627_060--Hb_126669_010 Hb_000155_080 Hb_000155_080 Hb_002627_060--Hb_000155_080 Hb_009193_130 Hb_009193_130 Hb_002627_060--Hb_009193_130 Hb_098315_100 Hb_098315_100 Hb_002627_060--Hb_098315_100 Hb_000270_400 Hb_000270_400 Hb_002627_060--Hb_000270_400 Hb_000172_610--Hb_000155_080 Hb_004254_040 Hb_004254_040 Hb_000172_610--Hb_004254_040 Hb_000172_610--Hb_098315_100 Hb_000172_610--Hb_126669_010 Hb_000172_610--Hb_000270_400 Hb_000928_230 Hb_000928_230 Hb_126669_010--Hb_000928_230 Hb_000523_020 Hb_000523_020 Hb_126669_010--Hb_000523_020 Hb_126669_010--Hb_000270_400 Hb_000376_150 Hb_000376_150 Hb_126669_010--Hb_000376_150 Hb_019654_070 Hb_019654_070 Hb_000155_080--Hb_019654_070 Hb_000155_080--Hb_098315_100 Hb_000856_100 Hb_000856_100 Hb_000155_080--Hb_000856_100 Hb_000155_080--Hb_009193_130 Hb_029464_010 Hb_029464_010 Hb_009193_130--Hb_029464_010 Hb_007158_030 Hb_007158_030 Hb_009193_130--Hb_007158_030 Hb_009193_130--Hb_000856_100 Hb_005271_030 Hb_005271_030 Hb_009193_130--Hb_005271_030 Hb_009193_130--Hb_098315_100 Hb_002506_110 Hb_002506_110 Hb_009193_130--Hb_002506_110 Hb_098315_100--Hb_000856_100 Hb_098315_100--Hb_019654_070 Hb_098315_100--Hb_000376_150 Hb_000365_350 Hb_000365_350 Hb_098315_100--Hb_000365_350 Hb_000270_400--Hb_000523_020 Hb_007545_210 Hb_007545_210 Hb_000270_400--Hb_007545_210 Hb_000270_400--Hb_004254_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
99.953 1.03622 1.99541 1.37221 57.4756 84.1765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.477 17.5568 16.7315 1.54688 0.189327

CAGE analysis