Hb_000155_080

Information

Type -
Description -
Location Contig155: 168216-177399
Sequence    

Annotation

kegg
ID pop:POPTR_0004s04910g
description POPTRDRAFT_555746; guanylate-binding family protein
nr
ID XP_002305110.1
description guanylate-binding family protein [Populus trichocarpa]
swissprot
ID Q5R9T9
description Guanylate-binding protein 6 OS=Pongo abelii GN=GBP6 PE=2 SV=1
trembl
ID B9H2Q0
description Guanylate-binding family protein OS=Populus trichocarpa GN=POPTR_0004s04910g PE=4 SV=1
Gene Ontology
ID GO:0003924
description interferon-induced guanylate-binding protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13432: 176831-177087
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000155_080 0.0 - - guanylate-binding family protein [Populus trichocarpa]
2 Hb_019654_070 0.084944714 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
3 Hb_000172_610 0.0919816651 - - hypothetical protein POPTR_0017s02240g, partial [Populus trichocarpa]
4 Hb_098315_100 0.0952401385 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
5 Hb_002627_060 0.1021040609 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
6 Hb_000856_100 0.108720911 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
7 Hb_009193_130 0.1099777743 - - hypothetical protein RCOM_1620550 [Ricinus communis]
8 Hb_000603_200 0.111326337 - - PREDICTED: myosin-15 [Jatropha curcas]
9 Hb_002835_190 0.1280954122 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
10 Hb_013479_020 0.1284999718 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
11 Hb_003636_090 0.1322837005 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
12 Hb_005488_100 0.1373222025 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
13 Hb_001252_160 0.1394533832 - - PREDICTED: PRA1 family protein A3 [Jatropha curcas]
14 Hb_000085_340 0.1421853632 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
15 Hb_000270_400 0.1422524386 - - lipase, putative [Ricinus communis]
16 Hb_007158_030 0.1425930577 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_000376_150 0.1430894716 - - O-acyltransferase WSD1 [Gossypium arboreum]
18 Hb_029464_010 0.1441955778 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
19 Hb_002506_110 0.1443896009 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
20 Hb_003777_220 0.144539887 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 41 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000155_080 Hb_000155_080 Hb_019654_070 Hb_019654_070 Hb_000155_080--Hb_019654_070 Hb_000172_610 Hb_000172_610 Hb_000155_080--Hb_000172_610 Hb_098315_100 Hb_098315_100 Hb_000155_080--Hb_098315_100 Hb_002627_060 Hb_002627_060 Hb_000155_080--Hb_002627_060 Hb_000856_100 Hb_000856_100 Hb_000155_080--Hb_000856_100 Hb_009193_130 Hb_009193_130 Hb_000155_080--Hb_009193_130 Hb_019654_070--Hb_098315_100 Hb_003656_030 Hb_003656_030 Hb_019654_070--Hb_003656_030 Hb_000085_340 Hb_000085_340 Hb_019654_070--Hb_000085_340 Hb_005488_100 Hb_005488_100 Hb_019654_070--Hb_005488_100 Hb_007178_010 Hb_007178_010 Hb_019654_070--Hb_007178_010 Hb_000172_610--Hb_002627_060 Hb_004254_040 Hb_004254_040 Hb_000172_610--Hb_004254_040 Hb_000172_610--Hb_098315_100 Hb_126669_010 Hb_126669_010 Hb_000172_610--Hb_126669_010 Hb_000270_400 Hb_000270_400 Hb_000172_610--Hb_000270_400 Hb_098315_100--Hb_000856_100 Hb_000376_150 Hb_000376_150 Hb_098315_100--Hb_000376_150 Hb_000365_350 Hb_000365_350 Hb_098315_100--Hb_000365_350 Hb_098315_100--Hb_009193_130 Hb_002627_060--Hb_126669_010 Hb_002627_060--Hb_009193_130 Hb_002627_060--Hb_098315_100 Hb_002627_060--Hb_000270_400 Hb_000856_100--Hb_009193_130 Hb_002506_110 Hb_002506_110 Hb_000856_100--Hb_002506_110 Hb_000856_100--Hb_019654_070 Hb_005271_030 Hb_005271_030 Hb_000856_100--Hb_005271_030 Hb_029464_010 Hb_029464_010 Hb_009193_130--Hb_029464_010 Hb_007158_030 Hb_007158_030 Hb_009193_130--Hb_007158_030 Hb_009193_130--Hb_005271_030 Hb_009193_130--Hb_002506_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
322.94 9.23323 6.78435 5.21472 239.645 367.417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
218.917 56.5238 114.05 8.02233 9.16808

CAGE analysis