Hb_009193_130

Information

Type -
Description -
Location Contig9193: 102094-105068
Sequence    

Annotation

kegg
ID rcu:RCOM_1620550
description hypothetical protein
nr
ID XP_002512072.1
description hypothetical protein RCOM_1620550 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RED3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1620550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62345: 102196-102759
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009193_130 0.0 - - hypothetical protein RCOM_1620550 [Ricinus communis]
2 Hb_029464_010 0.0550154123 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
3 Hb_007158_030 0.0600139376 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_000856_100 0.0856414932 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
5 Hb_005271_030 0.0902174725 - - copper-transporting atpase p-type, putative [Ricinus communis]
6 Hb_098315_100 0.0951877668 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
7 Hb_002506_110 0.0970988704 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
8 Hb_002627_060 0.1032558253 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
9 Hb_000329_620 0.1052858866 - - PREDICTED: uncharacterized protein LOC105643215 [Jatropha curcas]
10 Hb_000033_060 0.1088639126 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
11 Hb_000155_080 0.1099777743 - - guanylate-binding family protein [Populus trichocarpa]
12 Hb_000603_200 0.1129930702 - - PREDICTED: myosin-15 [Jatropha curcas]
13 Hb_000172_610 0.1240702039 - - hypothetical protein POPTR_0017s02240g, partial [Populus trichocarpa]
14 Hb_000483_370 0.126874512 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001846_080 0.1315525154 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
16 Hb_000376_150 0.1326110029 - - O-acyltransferase WSD1 [Gossypium arboreum]
17 Hb_043637_010 0.1332108284 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]
18 Hb_001252_160 0.1383291893 - - PREDICTED: PRA1 family protein A3 [Jatropha curcas]
19 Hb_001635_220 0.138962248 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
20 Hb_019654_070 0.1415494444 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_009193_130 Hb_009193_130 Hb_029464_010 Hb_029464_010 Hb_009193_130--Hb_029464_010 Hb_007158_030 Hb_007158_030 Hb_009193_130--Hb_007158_030 Hb_000856_100 Hb_000856_100 Hb_009193_130--Hb_000856_100 Hb_005271_030 Hb_005271_030 Hb_009193_130--Hb_005271_030 Hb_098315_100 Hb_098315_100 Hb_009193_130--Hb_098315_100 Hb_002506_110 Hb_002506_110 Hb_009193_130--Hb_002506_110 Hb_029464_010--Hb_007158_030 Hb_029464_010--Hb_005271_030 Hb_000329_620 Hb_000329_620 Hb_029464_010--Hb_000329_620 Hb_001146_070 Hb_001146_070 Hb_029464_010--Hb_001146_070 Hb_029464_010--Hb_000856_100 Hb_007158_030--Hb_000329_620 Hb_007158_030--Hb_005271_030 Hb_007158_030--Hb_002506_110 Hb_000603_200 Hb_000603_200 Hb_007158_030--Hb_000603_200 Hb_000856_100--Hb_098315_100 Hb_000856_100--Hb_002506_110 Hb_019654_070 Hb_019654_070 Hb_000856_100--Hb_019654_070 Hb_000856_100--Hb_005271_030 Hb_000155_080 Hb_000155_080 Hb_000856_100--Hb_000155_080 Hb_005271_030--Hb_001146_070 Hb_005271_030--Hb_002506_110 Hb_001017_100 Hb_001017_100 Hb_005271_030--Hb_001017_100 Hb_098315_100--Hb_019654_070 Hb_000376_150 Hb_000376_150 Hb_098315_100--Hb_000376_150 Hb_000365_350 Hb_000365_350 Hb_098315_100--Hb_000365_350 Hb_098315_100--Hb_000155_080 Hb_002506_110--Hb_000376_150 Hb_002506_110--Hb_098315_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.7325 0.988338 0.488082 0.48566 47.7684 57.9168
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.8489 6.16956 13.2246 1.61942 0.219234

CAGE analysis