Hb_000928_230

Information

Type -
Description -
Location Contig928: 221153-225076
Sequence    

Annotation

kegg
ID rcu:RCOM_1516710
description hypothetical protein
nr
ID XP_002524003.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LYG9
description Mechanosensitive ion channel protein 10 OS=Arabidopsis thaliana GN=MSL10 PE=1 SV=1
trembl
ID B9SDD4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1516710 PE=4 SV=1
Gene Ontology
ID GO:0016020
description mechanosensitive ion channel protein 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000928_230 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_126669_010 0.0806025563 transcription factor TF Family: bHLH lMYC4 [Hevea brasiliensis]
3 Hb_000270_400 0.1252699379 - - lipase, putative [Ricinus communis]
4 Hb_000523_020 0.1269132529 - - PREDICTED: uncharacterized protein LOC105650610 [Jatropha curcas]
5 Hb_002627_060 0.1283440851 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
6 Hb_000172_610 0.1315662117 - - hypothetical protein POPTR_0017s02240g, partial [Populus trichocarpa]
7 Hb_170116_010 0.163974386 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
8 Hb_001980_020 0.1641897594 - - -
9 Hb_003636_090 0.1643933884 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
10 Hb_000352_150 0.1746130703 - - hypothetical protein JCGZ_11641 [Jatropha curcas]
11 Hb_004254_040 0.176832636 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
12 Hb_007545_210 0.1796884193 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
13 Hb_000997_260 0.1812405836 - - PREDICTED: rRNA-processing protein EFG1 isoform X1 [Jatropha curcas]
14 Hb_000155_080 0.1818448815 - - guanylate-binding family protein [Populus trichocarpa]
15 Hb_000720_180 0.1818776269 - - -
16 Hb_000603_200 0.1829742483 - - PREDICTED: myosin-15 [Jatropha curcas]
17 Hb_002078_430 0.1834692752 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
18 Hb_001780_060 0.183709286 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
19 Hb_002875_090 0.1837494795 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_001178_020 0.1843296398 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000928_230 Hb_000928_230 Hb_126669_010 Hb_126669_010 Hb_000928_230--Hb_126669_010 Hb_000270_400 Hb_000270_400 Hb_000928_230--Hb_000270_400 Hb_000523_020 Hb_000523_020 Hb_000928_230--Hb_000523_020 Hb_002627_060 Hb_002627_060 Hb_000928_230--Hb_002627_060 Hb_000172_610 Hb_000172_610 Hb_000928_230--Hb_000172_610 Hb_170116_010 Hb_170116_010 Hb_000928_230--Hb_170116_010 Hb_126669_010--Hb_000523_020 Hb_126669_010--Hb_000270_400 Hb_126669_010--Hb_002627_060 Hb_126669_010--Hb_000172_610 Hb_000376_150 Hb_000376_150 Hb_126669_010--Hb_000376_150 Hb_000270_400--Hb_000523_020 Hb_007545_210 Hb_007545_210 Hb_000270_400--Hb_007545_210 Hb_004254_040 Hb_004254_040 Hb_000270_400--Hb_004254_040 Hb_000270_400--Hb_000172_610 Hb_000270_400--Hb_002627_060 Hb_000523_020--Hb_007545_210 Hb_002388_060 Hb_002388_060 Hb_000523_020--Hb_002388_060 Hb_000523_020--Hb_170116_010 Hb_000523_020--Hb_002627_060 Hb_002627_060--Hb_000172_610 Hb_000155_080 Hb_000155_080 Hb_002627_060--Hb_000155_080 Hb_009193_130 Hb_009193_130 Hb_002627_060--Hb_009193_130 Hb_098315_100 Hb_098315_100 Hb_002627_060--Hb_098315_100 Hb_000172_610--Hb_000155_080 Hb_000172_610--Hb_004254_040 Hb_000172_610--Hb_098315_100 Hb_043637_010 Hb_043637_010 Hb_170116_010--Hb_043637_010 Hb_000352_150 Hb_000352_150 Hb_170116_010--Hb_000352_150 Hb_001454_390 Hb_001454_390 Hb_170116_010--Hb_001454_390 Hb_002875_090 Hb_002875_090 Hb_170116_010--Hb_002875_090 Hb_001635_220 Hb_001635_220 Hb_170116_010--Hb_001635_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
93.8 0.48576 0 0.0195178 32.6705 54.0809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.2914 18.2086 10.6001 0.777821 0

CAGE analysis