Hb_000175_530

Information

Type -
Description -
Location Contig175: 374247-376049
Sequence    

Annotation

kegg
ID pop:POPTR_0003s06040g
description POPTRDRAFT_799617; hypothetical protein
nr
ID XP_011040032.1
description PREDICTED: uncharacterized protein LOC105136409 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067KXW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06171 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16736: 375091-375647 , PASA_asmbl_16737: 375751-376145
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_530 0.0 - - PREDICTED: uncharacterized protein LOC105136409 [Populus euphratica]
2 Hb_001146_070 0.1048688987 transcription factor TF Family: bHLH LMYC2 [Hevea brasiliensis]
3 Hb_000454_030 0.107025376 - - -
4 Hb_000329_540 0.1378908062 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
5 Hb_000441_230 0.1416907722 - - unnamed protein product [Coffea canephora]
6 Hb_005568_070 0.1461295657 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
7 Hb_000580_060 0.1480693214 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
8 Hb_005271_030 0.1485545646 - - copper-transporting atpase p-type, putative [Ricinus communis]
9 Hb_156144_020 0.1583033967 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
10 Hb_003226_170 0.1637249728 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
11 Hb_031862_170 0.1665036141 - - immunophilin, putative [Ricinus communis]
12 Hb_045502_010 0.1665685146 - - prefoldin subunit 1 [Jatropha curcas]
13 Hb_003540_140 0.171981044 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
14 Hb_027998_030 0.1723310406 - - laccase, putative [Ricinus communis]
15 Hb_007634_020 0.1731116587 - - -
16 Hb_007158_030 0.1734211307 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_001017_100 0.1735956972 - - PREDICTED: uncharacterized protein LOC105644705 [Jatropha curcas]
18 Hb_029464_010 0.1742532161 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
19 Hb_000156_030 0.1745458169 - - conserved hypothetical protein [Ricinus communis]
20 Hb_010290_020 0.1755102716 - - RAB6-interacting protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000175_530 Hb_000175_530 Hb_001146_070 Hb_001146_070 Hb_000175_530--Hb_001146_070 Hb_000454_030 Hb_000454_030 Hb_000175_530--Hb_000454_030 Hb_000329_540 Hb_000329_540 Hb_000175_530--Hb_000329_540 Hb_000441_230 Hb_000441_230 Hb_000175_530--Hb_000441_230 Hb_005568_070 Hb_005568_070 Hb_000175_530--Hb_005568_070 Hb_000580_060 Hb_000580_060 Hb_000175_530--Hb_000580_060 Hb_005271_030 Hb_005271_030 Hb_001146_070--Hb_005271_030 Hb_029464_010 Hb_029464_010 Hb_001146_070--Hb_029464_010 Hb_064201_010 Hb_064201_010 Hb_001146_070--Hb_064201_010 Hb_007158_030 Hb_007158_030 Hb_001146_070--Hb_007158_030 Hb_001017_100 Hb_001017_100 Hb_001146_070--Hb_001017_100 Hb_000454_030--Hb_000580_060 Hb_000454_030--Hb_000441_230 Hb_000454_030--Hb_001146_070 Hb_000454_030--Hb_000329_540 Hb_003226_170 Hb_003226_170 Hb_000454_030--Hb_003226_170 Hb_000329_540--Hb_000441_230 Hb_003540_140 Hb_003540_140 Hb_000329_540--Hb_003540_140 Hb_000156_030 Hb_000156_030 Hb_000329_540--Hb_000156_030 Hb_000329_540--Hb_005568_070 Hb_000329_540--Hb_000580_060 Hb_000441_230--Hb_003540_140 Hb_002506_110 Hb_002506_110 Hb_000441_230--Hb_002506_110 Hb_000441_230--Hb_003226_170 Hb_000441_230--Hb_005271_030 Hb_000441_230--Hb_000580_060 Hb_031862_170 Hb_031862_170 Hb_005568_070--Hb_031862_170 Hb_000018_160 Hb_000018_160 Hb_005568_070--Hb_000018_160 Hb_000211_080 Hb_000211_080 Hb_005568_070--Hb_000211_080 Hb_004102_130 Hb_004102_130 Hb_005568_070--Hb_004102_130 Hb_005568_070--Hb_003540_140 Hb_010290_020 Hb_010290_020 Hb_000580_060--Hb_010290_020 Hb_004307_040 Hb_004307_040 Hb_000580_060--Hb_004307_040 Hb_003360_020 Hb_003360_020 Hb_000580_060--Hb_003360_020 Hb_000580_060--Hb_005568_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.0182 0.963708 1.18443 1.76265 60.7627 51.0412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.24941 9.30541 3.9489 2.41152 0.0770208

CAGE analysis