Hb_003360_020

Information

Type -
Description -
Location Contig3360: 63841-66283
Sequence    

Annotation

kegg
ID pop:POPTR_0016s07860g
description POPTRDRAFT_576579; hypothetical protein
nr
ID XP_002322819.2
description hypothetical protein POPTR_0016s07860g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IIT5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s07860g PE=4 SV=2
Gene Ontology
ID GO:0004026
description hypothetical protein POPTR_0016s07860g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35197: 63862-66246 , PASA_asmbl_35198: 64485-66246
cDNA
(Sanger)
(ID:Location)		 024_D09.ab1: 63862-64449

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003360_020 0.0 - - hypothetical protein POPTR_0016s07860g [Populus trichocarpa]
2 Hb_002253_110 0.1304892086 - - cysteine desulfurylase, putative [Ricinus communis]
3 Hb_000441_230 0.1317830535 - - unnamed protein product [Coffea canephora]
4 Hb_002506_110 0.1371655959 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
5 Hb_000580_060 0.1373415442 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
6 Hb_000033_060 0.1428335345 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
7 Hb_010290_020 0.149802931 - - RAB6-interacting protein, putative [Ricinus communis]
8 Hb_003540_140 0.1520673076 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
9 Hb_002769_040 0.1639362931 - - farnesyl-diphosphate farnesyltransferase, putative [Ricinus communis]
10 Hb_009193_130 0.1648978076 - - hypothetical protein RCOM_1620550 [Ricinus communis]
11 Hb_005271_030 0.1649115708 - - copper-transporting atpase p-type, putative [Ricinus communis]
12 Hb_000329_540 0.1656486816 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
13 Hb_000856_100 0.1669318617 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
14 Hb_029464_010 0.1785280205 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
15 Hb_000454_030 0.180475006 - - -
16 Hb_001017_100 0.1809034251 - - PREDICTED: uncharacterized protein LOC105644705 [Jatropha curcas]
17 Hb_171554_020 0.1827436568 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
18 Hb_074961_010 0.1886858876 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
19 Hb_003226_170 0.1903571467 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
20 Hb_098315_100 0.1922728636 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003360_020 Hb_003360_020 Hb_002253_110 Hb_002253_110 Hb_003360_020--Hb_002253_110 Hb_000441_230 Hb_000441_230 Hb_003360_020--Hb_000441_230 Hb_002506_110 Hb_002506_110 Hb_003360_020--Hb_002506_110 Hb_000580_060 Hb_000580_060 Hb_003360_020--Hb_000580_060 Hb_000033_060 Hb_000033_060 Hb_003360_020--Hb_000033_060 Hb_010290_020 Hb_010290_020 Hb_003360_020--Hb_010290_020 Hb_002769_040 Hb_002769_040 Hb_002253_110--Hb_002769_040 Hb_000856_100 Hb_000856_100 Hb_002253_110--Hb_000856_100 Hb_002253_110--Hb_000033_060 Hb_009193_130 Hb_009193_130 Hb_002253_110--Hb_009193_130 Hb_000117_020 Hb_000117_020 Hb_002253_110--Hb_000117_020 Hb_000329_540 Hb_000329_540 Hb_000441_230--Hb_000329_540 Hb_003540_140 Hb_003540_140 Hb_000441_230--Hb_003540_140 Hb_000441_230--Hb_002506_110 Hb_003226_170 Hb_003226_170 Hb_000441_230--Hb_003226_170 Hb_005271_030 Hb_005271_030 Hb_000441_230--Hb_005271_030 Hb_000441_230--Hb_000580_060 Hb_000376_150 Hb_000376_150 Hb_002506_110--Hb_000376_150 Hb_002506_110--Hb_009193_130 Hb_098315_100 Hb_098315_100 Hb_002506_110--Hb_098315_100 Hb_002506_110--Hb_005271_030 Hb_002506_110--Hb_000856_100 Hb_007158_030 Hb_007158_030 Hb_002506_110--Hb_007158_030 Hb_000580_060--Hb_010290_020 Hb_004307_040 Hb_004307_040 Hb_000580_060--Hb_004307_040 Hb_000454_030 Hb_000454_030 Hb_000580_060--Hb_000454_030 Hb_005568_070 Hb_005568_070 Hb_000580_060--Hb_005568_070 Hb_000033_060--Hb_009193_130 Hb_002627_060 Hb_002627_060 Hb_000033_060--Hb_002627_060 Hb_000033_060--Hb_000856_100 Hb_000033_060--Hb_098315_100 Hb_000033_060--Hb_002506_110 Hb_010290_020--Hb_004307_040 Hb_010290_020--Hb_003540_140 Hb_010290_020--Hb_005568_070 Hb_010290_020--Hb_000329_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
688.811 6.39217 2.92385 36.2496 491.158 996.259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
194.524 25.7443 56.4734 3.0502 7.56101

CAGE analysis