Hb_010290_020

Information

Type -
Description -
Location Contig10290: 40413-46351
Sequence    

Annotation

kegg
ID rcu:RCOM_1165000
description RAB6-interacting protein, putative
nr
ID XP_002523956.1
description RAB6-interacting protein, putative [Ricinus communis]
swissprot
ID F4KEW8
description Protein NETWORKED 4A OS=Arabidopsis thaliana GN=NET4A PE=2 SV=1
trembl
ID B9SD87
description RAB6-interacting protein, putative OS=Ricinus communis GN=RCOM_1165000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01157: 40246-46055 , PASA_asmbl_01158: 42703-46158 , PASA_asmbl_01159: 42703-46073
cDNA
(Sanger)
(ID:Location)		 051_P11.ab1: 42788-46158

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010290_020 0.0 - - RAB6-interacting protein, putative [Ricinus communis]
2 Hb_000580_060 0.0973404159 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
3 Hb_004307_040 0.1074951945 - - -
4 Hb_003540_140 0.1462074267 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
5 Hb_005568_070 0.1491260037 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
6 Hb_003360_020 0.149802931 - - hypothetical protein POPTR_0016s07860g [Populus trichocarpa]
7 Hb_000329_540 0.151499672 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
8 Hb_000441_230 0.1543389117 - - unnamed protein product [Coffea canephora]
9 Hb_001892_160 0.1559478375 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
10 Hb_171554_020 0.1589715879 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
11 Hb_000033_060 0.1660442887 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
12 Hb_000175_530 0.1755102716 - - PREDICTED: uncharacterized protein LOC105136409 [Populus euphratica]
13 Hb_001241_040 0.180204345 - - -
14 Hb_000454_030 0.185540191 - - -
15 Hb_012150_070 0.1902650168 - - hypothetical protein JCGZ_04984 [Jatropha curcas]
16 Hb_009193_130 0.1905357743 - - hypothetical protein RCOM_1620550 [Ricinus communis]
17 Hb_002253_110 0.194443114 - - cysteine desulfurylase, putative [Ricinus communis]
18 Hb_000211_080 0.1956126891 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
19 Hb_005271_030 0.2008100893 - - copper-transporting atpase p-type, putative [Ricinus communis]
20 Hb_003226_170 0.2014730682 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010290_020 Hb_010290_020 Hb_000580_060 Hb_000580_060 Hb_010290_020--Hb_000580_060 Hb_004307_040 Hb_004307_040 Hb_010290_020--Hb_004307_040 Hb_003540_140 Hb_003540_140 Hb_010290_020--Hb_003540_140 Hb_005568_070 Hb_005568_070 Hb_010290_020--Hb_005568_070 Hb_003360_020 Hb_003360_020 Hb_010290_020--Hb_003360_020 Hb_000329_540 Hb_000329_540 Hb_010290_020--Hb_000329_540 Hb_000441_230 Hb_000441_230 Hb_000580_060--Hb_000441_230 Hb_000580_060--Hb_004307_040 Hb_000454_030 Hb_000454_030 Hb_000580_060--Hb_000454_030 Hb_000580_060--Hb_003360_020 Hb_000580_060--Hb_005568_070 Hb_004307_040--Hb_005568_070 Hb_027998_030 Hb_027998_030 Hb_004307_040--Hb_027998_030 Hb_004307_040--Hb_003540_140 Hb_004307_040--Hb_000329_540 Hb_002769_040 Hb_002769_040 Hb_003540_140--Hb_002769_040 Hb_003540_140--Hb_000441_230 Hb_003540_140--Hb_000329_540 Hb_000156_030 Hb_000156_030 Hb_003540_140--Hb_000156_030 Hb_061256_030 Hb_061256_030 Hb_003540_140--Hb_061256_030 Hb_003226_170 Hb_003226_170 Hb_003540_140--Hb_003226_170 Hb_031862_170 Hb_031862_170 Hb_005568_070--Hb_031862_170 Hb_000018_160 Hb_000018_160 Hb_005568_070--Hb_000018_160 Hb_000211_080 Hb_000211_080 Hb_005568_070--Hb_000211_080 Hb_005568_070--Hb_000329_540 Hb_004102_130 Hb_004102_130 Hb_005568_070--Hb_004102_130 Hb_005568_070--Hb_003540_140 Hb_002253_110 Hb_002253_110 Hb_003360_020--Hb_002253_110 Hb_003360_020--Hb_000441_230 Hb_002506_110 Hb_002506_110 Hb_003360_020--Hb_002506_110 Hb_000033_060 Hb_000033_060 Hb_003360_020--Hb_000033_060 Hb_000329_540--Hb_000441_230 Hb_000329_540--Hb_000156_030 Hb_000175_530 Hb_000175_530 Hb_000329_540--Hb_000175_530 Hb_000329_540--Hb_000580_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1727.3 62.9722 21.3467 10.1654 1053.59 1986.85
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
124.762 63.286 171.671 42.6906 16.3248

CAGE analysis