Hb_000117_020

Information

Type -
Description -
Location Contig117: 16035-17792
Sequence    

Annotation

kegg
ID rcu:RCOM_0701530
description Receptor protein kinase CLAVATA1 precursor, putative (EC:1.3.1.74)
nr
ID XP_002523535.1
description Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
swissprot
ID Q9FII5
description Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana GN=TDR PE=1 SV=1
trembl
ID B9SC16
description Receptor protein kinase CLAVATA1, putative OS=Ricinus communis GN=RCOM_0701530 PE=4 SV=1
Gene Ontology
ID GO:0005886
description leucine-rich repeat receptor-like protein kinase tdr

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000117_020 0.0 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
2 Hb_074961_010 0.1096641743 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
3 Hb_103351_010 0.1119835926 - - hypothetical protein POPTR_0002s01570g [Populus trichocarpa]
4 Hb_000117_010 0.1151234425 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Malus domestica]
5 Hb_002253_110 0.143576087 - - cysteine desulfurylase, putative [Ricinus communis]
6 Hb_124587_010 0.152929119 - - PREDICTED: importin-5-like [Musa acuminata subsp. malaccensis]
7 Hb_000707_070 0.184498373 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like isoform X1 [Populus euphratica]
8 Hb_002769_040 0.191965232 - - farnesyl-diphosphate farnesyltransferase, putative [Ricinus communis]
9 Hb_000033_060 0.1955673957 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
10 Hb_006455_080 0.1969930071 - - PREDICTED: transcription factor GTE6-like isoform X2 [Nelumbo nucifera]
11 Hb_005271_150 0.2015380092 - - PREDICTED: EKC/KEOPS complex subunit Tprkb-like [Malus domestica]
12 Hb_006198_050 0.2034051815 - - protein with unknown function [Ricinus communis]
13 Hb_000270_500 0.2058887995 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
14 Hb_003360_020 0.2099782543 - - hypothetical protein POPTR_0016s07860g [Populus trichocarpa]
15 Hb_077219_010 0.2120017421 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000466_060 0.2136750471 - - phosphofructokinase [Hevea brasiliensis]
17 Hb_001252_170 0.2138544962 desease resistance Gene Name: Exostosin hypothetical protein PRUPE_ppa001357mg [Prunus persica]
18 Hb_000248_050 0.2158343029 - - PREDICTED: uncharacterized protein LOC105647198 isoform X3 [Jatropha curcas]
19 Hb_073339_010 0.2187373291 - - hypothetical protein 30 [Hevea brasiliensis]
20 Hb_023327_030 0.2196141439 - - osmotin-like protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000117_020 Hb_000117_020 Hb_074961_010 Hb_074961_010 Hb_000117_020--Hb_074961_010 Hb_103351_010 Hb_103351_010 Hb_000117_020--Hb_103351_010 Hb_000117_010 Hb_000117_010 Hb_000117_020--Hb_000117_010 Hb_002253_110 Hb_002253_110 Hb_000117_020--Hb_002253_110 Hb_124587_010 Hb_124587_010 Hb_000117_020--Hb_124587_010 Hb_000707_070 Hb_000707_070 Hb_000117_020--Hb_000707_070 Hb_074961_010--Hb_000117_010 Hb_074961_010--Hb_002253_110 Hb_000033_060 Hb_000033_060 Hb_074961_010--Hb_000033_060 Hb_000878_040 Hb_000878_040 Hb_074961_010--Hb_000878_040 Hb_023327_030 Hb_023327_030 Hb_074961_010--Hb_023327_030 Hb_103351_010--Hb_124587_010 Hb_103351_010--Hb_002253_110 Hb_103351_010--Hb_074961_010 Hb_103351_010--Hb_000117_010 Hb_103351_010--Hb_000707_070 Hb_005271_150 Hb_005271_150 Hb_000117_010--Hb_005271_150 Hb_073339_010 Hb_073339_010 Hb_000117_010--Hb_073339_010 Hb_000117_010--Hb_124587_010 Hb_000117_010--Hb_023327_030 Hb_003360_020 Hb_003360_020 Hb_002253_110--Hb_003360_020 Hb_002769_040 Hb_002769_040 Hb_002253_110--Hb_002769_040 Hb_000856_100 Hb_000856_100 Hb_002253_110--Hb_000856_100 Hb_002253_110--Hb_000033_060 Hb_009193_130 Hb_009193_130 Hb_002253_110--Hb_009193_130 Hb_124587_010--Hb_074961_010 Hb_124587_010--Hb_002253_110 Hb_121236_010 Hb_121236_010 Hb_124587_010--Hb_121236_010 Hb_000707_070--Hb_124587_010 Hb_126838_020 Hb_126838_020 Hb_000707_070--Hb_126838_020 Hb_000295_090 Hb_000295_090 Hb_000707_070--Hb_000295_090 Hb_000059_090 Hb_000059_090 Hb_000707_070--Hb_000059_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
82.4641 2.76197 1.32571 14.4297 48.3576 215.249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.7284 5.43499 40.9549 6.42196 1.59715

CAGE analysis