Hb_005271_150

Information

Type -
Description -
Location Contig5271: 102440-104060
Sequence    

Annotation

kegg
ID mdm:103450800
description EKC/KEOPS complex subunit Tprkb-like
nr
ID XP_008388413.1
description PREDICTED: EKC/KEOPS complex subunit Tprkb-like [Malus domestica]
swissprot
ID -
description -
trembl
ID M5VTL5
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024946mg PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47058: 102928-104094
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005271_150 0.0 - - PREDICTED: EKC/KEOPS complex subunit Tprkb-like [Malus domestica]
2 Hb_012286_050 0.1386707856 - - PREDICTED: syntaxin-61 [Jatropha curcas]
3 Hb_000117_010 0.1479729642 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Malus domestica]
4 Hb_020902_010 0.1552492694 - - PREDICTED: uncharacterized protein LOC104595551 [Nelumbo nucifera]
5 Hb_001433_220 0.1579333339 - - protein phosphatase, putative [Ricinus communis]
6 Hb_013405_040 0.1603674357 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000671_100 0.1653921414 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
8 Hb_006198_050 0.1656580589 - - protein with unknown function [Ricinus communis]
9 Hb_000031_030 0.1691670087 - - PREDICTED: plasma membrane ATPase 4 [Jatropha curcas]
10 Hb_006455_110 0.1692773277 - - bromodomain-containing protein, putative [Ricinus communis]
11 Hb_036034_010 0.1694281196 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000696_350 0.173115529 - - ARM repeat superfamily protein isoform 2 [Theobroma cacao]
13 Hb_006455_090 0.1731612541 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
14 Hb_004735_010 0.1736372696 - - PREDICTED: protein arginine N-methyltransferase PRMT10 [Vitis vinifera]
15 Hb_000436_080 0.1737883517 - - unnamed protein product [Coffea canephora]
16 Hb_002326_050 0.1775328453 - - PREDICTED: uncharacterized protein LOC105633701 [Jatropha curcas]
17 Hb_006455_080 0.1788127274 - - PREDICTED: transcription factor GTE6-like isoform X2 [Nelumbo nucifera]
18 Hb_000878_130 0.179271662 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011287_090 0.1802727588 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
20 Hb_001902_050 0.180625689 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]

Gene co-expression network

sample Hb_005271_150 Hb_005271_150 Hb_012286_050 Hb_012286_050 Hb_005271_150--Hb_012286_050 Hb_000117_010 Hb_000117_010 Hb_005271_150--Hb_000117_010 Hb_020902_010 Hb_020902_010 Hb_005271_150--Hb_020902_010 Hb_001433_220 Hb_001433_220 Hb_005271_150--Hb_001433_220 Hb_013405_040 Hb_013405_040 Hb_005271_150--Hb_013405_040 Hb_000671_100 Hb_000671_100 Hb_005271_150--Hb_000671_100 Hb_000307_200 Hb_000307_200 Hb_012286_050--Hb_000307_200 Hb_002023_020 Hb_002023_020 Hb_012286_050--Hb_002023_020 Hb_006455_090 Hb_006455_090 Hb_012286_050--Hb_006455_090 Hb_000364_150 Hb_000364_150 Hb_012286_050--Hb_000364_150 Hb_012286_050--Hb_020902_010 Hb_039253_010 Hb_039253_010 Hb_012286_050--Hb_039253_010 Hb_074961_010 Hb_074961_010 Hb_000117_010--Hb_074961_010 Hb_000117_020 Hb_000117_020 Hb_000117_010--Hb_000117_020 Hb_073339_010 Hb_073339_010 Hb_000117_010--Hb_073339_010 Hb_124587_010 Hb_124587_010 Hb_000117_010--Hb_124587_010 Hb_023327_030 Hb_023327_030 Hb_000117_010--Hb_023327_030 Hb_036034_010 Hb_036034_010 Hb_020902_010--Hb_036034_010 Hb_000878_130 Hb_000878_130 Hb_020902_010--Hb_000878_130 Hb_020902_010--Hb_000307_200 Hb_014568_030 Hb_014568_030 Hb_020902_010--Hb_014568_030 Hb_004735_010 Hb_004735_010 Hb_020902_010--Hb_004735_010 Hb_006935_050 Hb_006935_050 Hb_001433_220--Hb_006935_050 Hb_000229_040 Hb_000229_040 Hb_001433_220--Hb_000229_040 Hb_003195_060 Hb_003195_060 Hb_001433_220--Hb_003195_060 Hb_000049_070 Hb_000049_070 Hb_001433_220--Hb_000049_070 Hb_000436_080 Hb_000436_080 Hb_001433_220--Hb_000436_080 Hb_063134_010 Hb_063134_010 Hb_001433_220--Hb_063134_010 Hb_001633_020 Hb_001633_020 Hb_013405_040--Hb_001633_020 Hb_001673_010 Hb_001673_010 Hb_013405_040--Hb_001673_010 Hb_000866_420 Hb_000866_420 Hb_013405_040--Hb_000866_420 Hb_001124_080 Hb_001124_080 Hb_013405_040--Hb_001124_080 Hb_003919_010 Hb_003919_010 Hb_013405_040--Hb_003919_010 Hb_024714_030 Hb_024714_030 Hb_000671_100--Hb_024714_030 Hb_002014_080 Hb_002014_080 Hb_000671_100--Hb_002014_080 Hb_010298_010 Hb_010298_010 Hb_000671_100--Hb_010298_010 Hb_035524_030 Hb_035524_030 Hb_000671_100--Hb_035524_030 Hb_000671_100--Hb_014568_030 Hb_009558_020 Hb_009558_020 Hb_000671_100--Hb_009558_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.1353 0.18909 0.521871 2.69174 3.73398 14.6294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.02497 1.98088 6.393 0.960988 0.999302

CAGE analysis