Hb_000866_420

Information

Type -
Description -
Location Contig866: 284719-288379
Sequence    

Annotation

kegg
ID rcu:RCOM_1614760
description Remorin, putative
nr
ID XP_002511833.1
description Remorin, putative [Ricinus communis]
swissprot
ID P93788
description Remorin OS=Solanum tuberosum PE=1 SV=1
trembl
ID B9RDP4
description Remorin, putative OS=Ricinus communis GN=RCOM_1614760 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60987: 287436-288007 , PASA_asmbl_60988: 284565-288751 , PASA_asmbl_60989: 287029-288007 , PASA_asmbl_60991: 286068-286392 , PASA_asmbl_60992: 284565-288751
cDNA
(Sanger)
(ID:Location)		 011_C17.ab1: 284815-288372 , 017_M14.ab1: 284815-288303 , 018_A09.ab1: 284815-288272 , 026_I20.ab1: 284815-288307 , 033_E20.ab1: 284815-288334 , 034_G15.ab1: 284815-288346 , 041_F11.ab1: 284815-288342 , 046_G07.ab1: 284815-288346

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_420 0.0 - - Remorin, putative [Ricinus communis]
2 Hb_001575_040 0.1290901068 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 isoform X2 [Jatropha curcas]
3 Hb_013405_040 0.1365254172 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002475_050 0.1435928723 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
5 Hb_007765_010 0.1443512086 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000606_080 0.1444062439 - - PREDICTED: RNA-binding protein Nova-2-like [Malus domestica]
7 Hb_001673_010 0.146044764 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
8 Hb_031866_060 0.1520868343 - - PREDICTED: uncharacterized protein LOC105642381 isoform X2 [Jatropha curcas]
9 Hb_001341_050 0.1554164067 - - ATP synthase D chain, mitochondrial [Theobroma cacao]
10 Hb_002023_020 0.1593220281 - - PREDICTED: aladin isoform X2 [Jatropha curcas]
11 Hb_000878_040 0.161087914 - - PREDICTED: uncharacterized protein LOC105635780 isoform X1 [Jatropha curcas]
12 Hb_152079_010 0.1618498403 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
13 Hb_002739_080 0.1631112525 - - cystathionine beta-lyase, putative [Ricinus communis]
14 Hb_003656_140 0.163728967 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
15 Hb_003363_010 0.1650950417 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000671_100 0.1650972869 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
17 Hb_005608_030 0.1675134739 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
18 Hb_002774_070 0.1683548281 - - hypothetical protein EUGRSUZ_F00307 [Eucalyptus grandis]
19 Hb_000198_070 0.1692223477 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
20 Hb_012286_050 0.1704712787 - - PREDICTED: syntaxin-61 [Jatropha curcas]

Gene co-expression network

sample Hb_000866_420 Hb_000866_420 Hb_001575_040 Hb_001575_040 Hb_000866_420--Hb_001575_040 Hb_013405_040 Hb_013405_040 Hb_000866_420--Hb_013405_040 Hb_002475_050 Hb_002475_050 Hb_000866_420--Hb_002475_050 Hb_007765_010 Hb_007765_010 Hb_000866_420--Hb_007765_010 Hb_000606_080 Hb_000606_080 Hb_000866_420--Hb_000606_080 Hb_001673_010 Hb_001673_010 Hb_000866_420--Hb_001673_010 Hb_152079_010 Hb_152079_010 Hb_001575_040--Hb_152079_010 Hb_010423_020 Hb_010423_020 Hb_001575_040--Hb_010423_020 Hb_000436_040 Hb_000436_040 Hb_001575_040--Hb_000436_040 Hb_024990_010 Hb_024990_010 Hb_001575_040--Hb_024990_010 Hb_004881_050 Hb_004881_050 Hb_001575_040--Hb_004881_050 Hb_005000_100 Hb_005000_100 Hb_001575_040--Hb_005000_100 Hb_001633_020 Hb_001633_020 Hb_013405_040--Hb_001633_020 Hb_013405_040--Hb_001673_010 Hb_001124_080 Hb_001124_080 Hb_013405_040--Hb_001124_080 Hb_005271_150 Hb_005271_150 Hb_013405_040--Hb_005271_150 Hb_003919_010 Hb_003919_010 Hb_013405_040--Hb_003919_010 Hb_000372_040 Hb_000372_040 Hb_002475_050--Hb_000372_040 Hb_079326_010 Hb_079326_010 Hb_002475_050--Hb_079326_010 Hb_002986_050 Hb_002986_050 Hb_002475_050--Hb_002986_050 Hb_002475_050--Hb_004881_050 Hb_002739_080 Hb_002739_080 Hb_002475_050--Hb_002739_080 Hb_005000_270 Hb_005000_270 Hb_002475_050--Hb_005000_270 Hb_000429_250 Hb_000429_250 Hb_007765_010--Hb_000429_250 Hb_087762_010 Hb_087762_010 Hb_007765_010--Hb_087762_010 Hb_088065_010 Hb_088065_010 Hb_007765_010--Hb_088065_010 Hb_000035_130 Hb_000035_130 Hb_007765_010--Hb_000035_130 Hb_005965_010 Hb_005965_010 Hb_007765_010--Hb_005965_010 Hb_002067_120 Hb_002067_120 Hb_000606_080--Hb_002067_120 Hb_041392_010 Hb_041392_010 Hb_000606_080--Hb_041392_010 Hb_003502_080 Hb_003502_080 Hb_000606_080--Hb_003502_080 Hb_000197_210 Hb_000197_210 Hb_000606_080--Hb_000197_210 Hb_000679_150 Hb_000679_150 Hb_000606_080--Hb_000679_150 Hb_006951_020 Hb_006951_020 Hb_000606_080--Hb_006951_020 Hb_071736_010 Hb_071736_010 Hb_001673_010--Hb_071736_010 Hb_000649_050 Hb_000649_050 Hb_001673_010--Hb_000649_050 Hb_001855_010 Hb_001855_010 Hb_001673_010--Hb_001855_010 Hb_005883_050 Hb_005883_050 Hb_001673_010--Hb_005883_050 Hb_003641_050 Hb_003641_050 Hb_001673_010--Hb_003641_050 Hb_000023_140 Hb_000023_140 Hb_001673_010--Hb_000023_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
357.921 44.9991 118.419 129.817 126.104 644.703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
222.414 80.8637 142.031 61.0401 61.2239

CAGE analysis