Hb_087762_010

Information

Type -
Description -
Location Contig87762: 1073-1324
Sequence    

Annotation

kegg
ID rcu:RCOM_1526930
description electron transporter, putative
nr
ID ADR70873.1
description thioredoxin-like family protein [Hevea brasiliensis]
swissprot
ID Q9FMN4
description Thioredoxin-like protein Clot OS=Arabidopsis thaliana GN=At5g42850 PE=2 SV=1
trembl
ID V5IV21
description Thioredoxin-like family protein OS=Hevea brasiliensis GN=Trxl1 PE=2 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin-like protein clot

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61285: 538-767 , PASA_asmbl_61287: 1304-1492
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_087762_010 0.0 - - thioredoxin-like family protein [Hevea brasiliensis]
2 Hb_000891_040 0.1499727714 - - hypothetical protein JCGZ_11252 [Jatropha curcas]
3 Hb_003297_010 0.1547771332 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
4 Hb_155375_010 0.1650332105 - - hypothetical protein JCGZ_23388 [Jatropha curcas]
5 Hb_002157_190 0.1699935048 - - PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
6 Hb_002253_040 0.1719917629 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
7 Hb_007765_010 0.1748651753 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001818_080 0.1751785619 - - PREDICTED: F-box protein At3g58530 isoform X1 [Jatropha curcas]
9 Hb_003747_040 0.1777773641 - - -
10 Hb_000442_100 0.17838688 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
11 Hb_000193_150 0.1798393274 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
12 Hb_000088_020 0.1812351774 transcription factor TF Family: M-type hypothetical protein JCGZ_10946 [Jatropha curcas]
13 Hb_000243_280 0.1812818833 - - -
14 Hb_181320_010 0.1846932003 - - PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]
15 Hb_004070_030 0.1853456499 - - PREDICTED: phosphatidate cytidylyltransferase, mitochondrial isoform X2 [Jatropha curcas]
16 Hb_001976_050 0.1856870845 - - PREDICTED: protein SKIP34 [Jatropha curcas]
17 Hb_004994_310 0.1870874053 - - Kiwellin, putative [Ricinus communis]
18 Hb_004204_200 0.1883131714 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
19 Hb_012114_060 0.1893262386 - - PREDICTED: uncharacterized protein LOC105645814 [Jatropha curcas]
20 Hb_011609_030 0.1895515269 - - conserved hypothetical protein 13 [Hevea brasiliensis]

Gene co-expression network

sample Hb_087762_010 Hb_087762_010 Hb_000891_040 Hb_000891_040 Hb_087762_010--Hb_000891_040 Hb_003297_010 Hb_003297_010 Hb_087762_010--Hb_003297_010 Hb_155375_010 Hb_155375_010 Hb_087762_010--Hb_155375_010 Hb_002157_190 Hb_002157_190 Hb_087762_010--Hb_002157_190 Hb_002253_040 Hb_002253_040 Hb_087762_010--Hb_002253_040 Hb_007765_010 Hb_007765_010 Hb_087762_010--Hb_007765_010 Hb_006637_060 Hb_006637_060 Hb_000891_040--Hb_006637_060 Hb_007632_250 Hb_007632_250 Hb_000891_040--Hb_007632_250 Hb_119583_010 Hb_119583_010 Hb_000891_040--Hb_119583_010 Hb_000510_090 Hb_000510_090 Hb_000891_040--Hb_000510_090 Hb_000442_100 Hb_000442_100 Hb_000891_040--Hb_000442_100 Hb_181320_010 Hb_181320_010 Hb_000891_040--Hb_181320_010 Hb_000175_090 Hb_000175_090 Hb_003297_010--Hb_000175_090 Hb_012114_060 Hb_012114_060 Hb_003297_010--Hb_012114_060 Hb_007778_020 Hb_007778_020 Hb_003297_010--Hb_007778_020 Hb_007558_010 Hb_007558_010 Hb_003297_010--Hb_007558_010 Hb_004137_030 Hb_004137_030 Hb_003297_010--Hb_004137_030 Hb_155375_010--Hb_000510_090 Hb_001976_050 Hb_001976_050 Hb_155375_010--Hb_001976_050 Hb_002217_310 Hb_002217_310 Hb_155375_010--Hb_002217_310 Hb_000243_280 Hb_000243_280 Hb_155375_010--Hb_000243_280 Hb_000749_150 Hb_000749_150 Hb_155375_010--Hb_000749_150 Hb_000620_080 Hb_000620_080 Hb_155375_010--Hb_000620_080 Hb_009411_020 Hb_009411_020 Hb_002157_190--Hb_009411_020 Hb_000175_390 Hb_000175_390 Hb_002157_190--Hb_000175_390 Hb_001616_090 Hb_001616_090 Hb_002157_190--Hb_001616_090 Hb_012132_040 Hb_012132_040 Hb_002157_190--Hb_012132_040 Hb_000156_140 Hb_000156_140 Hb_002157_190--Hb_000156_140 Hb_000088_200 Hb_000088_200 Hb_002157_190--Hb_000088_200 Hb_004109_060 Hb_004109_060 Hb_002253_040--Hb_004109_060 Hb_001818_080 Hb_001818_080 Hb_002253_040--Hb_001818_080 Hb_001158_220 Hb_001158_220 Hb_002253_040--Hb_001158_220 Hb_031091_010 Hb_031091_010 Hb_002253_040--Hb_031091_010 Hb_007643_050 Hb_007643_050 Hb_002253_040--Hb_007643_050 Hb_000116_110 Hb_000116_110 Hb_002253_040--Hb_000116_110 Hb_000866_420 Hb_000866_420 Hb_007765_010--Hb_000866_420 Hb_000429_250 Hb_000429_250 Hb_007765_010--Hb_000429_250 Hb_088065_010 Hb_088065_010 Hb_007765_010--Hb_088065_010 Hb_000035_130 Hb_000035_130 Hb_007765_010--Hb_000035_130 Hb_005965_010 Hb_005965_010 Hb_007765_010--Hb_005965_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
418.325 121.532 112.85 55.1392 85.1506 612.78
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
174.643 233.424 94.7883 62.4736 16.596

CAGE analysis